C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: MICAL-like 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000170773 Micall2-003 ENSMUSG00000036718 10090 - 5:139706696-139732834 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000170773
Transcript ID Brain Breast Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000170773 0.822±0.00 0.389±0.00 0.153±0.05 0.258±0.12 0.164±0.04 0.279±0.10 1.519±0.78 0.673±0.79 0.483±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008V5 CIL_0008V5_0002 VISTA 5:139236245-139837428
CIL_0008DL CIL_0008DL_0002 VISTA 5:139238772-139840184
CIL_0002H6 CIL_0002H6_0003 CGP 5:139543494-139736336
CIL_0000ZP CIL_0000ZP_0002 CGP 5:139706693-139775678

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005923 IDA tight junction
GO:0008270 IEA zinc ion binding
GO:0032432 IDA actin filament bundle
GO:0032456 IDA endocytic recycling

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000297508 MICALL2-001 protein_coding Homo_sapiens 0 536
ENST00000413446 MICALL2-007 nonsense_mediated_decay Homo_sapiens 0 534
ENST00000460198 MICALL2-013 retained_intron Homo_sapiens 0 305
ENST00000467394 MICALL2-004 retained_intron Homo_sapiens 0 536
ENST00000471899 MICALL2-012 processed_transcript Homo_sapiens 0 440
ENST00000472100 MICALL2-002 retained_intron Homo_sapiens 0 468
ENST00000479007 MICALL2-005 retained_intron Homo_sapiens 0 534
ENST00000496184 MICALL2-003 retained_intron Homo_sapiens 1.96182e-44 185

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