C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: schwannomin interacting protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000170788 Schip1-001 ENSMUSG00000027777 10090 + 3:68572245-68626464 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungOvaryTestisENSMUST00000170788
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Ovary Testis
ENSMUST00000170788 0.700±0.16 1.268±0.20 25.450±6.33 0.988±0.18 1.928±0.33 1.834±0.34 0.118±0.00 8.977±1.05 1.199±0.68 0.917±0.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004JS CIL_0004JS_0003 CGP 3:67892220-68626481

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000337808 IQCJ-SCHIP1-008 protein_coding Homo_sapiens 0 1195
ENST00000412423 IQCJ-SCHIP1-010 protein_coding Homo_sapiens 0 1199
ENST00000445224 SCHIP1-004 protein_coding Homo_sapiens 0 1570
ENST00000460298 IQCJ-SCHIP1-011 protein_coding Homo_sapiens 0 928
ENST00000461058 SCHIP1-011 retained_intron Homo_sapiens 0 619
ENST00000472483 SCHIP1-014 retained_intron Homo_sapiens 0 761
ENST00000473061 IQCJ-SCHIP1-012 protein_coding Homo_sapiens 0 409
ENST00000476809 IQCJ-SCHIP1-002 protein_coding Homo_sapiens 0 992
ENST00000482804 SCHIP1-005 protein_coding Homo_sapiens 0 1199
ENST00000482885 SCHIP1-006 retained_intron Homo_sapiens 0 326
ENST00000485419 IQCJ-SCHIP1-001 protein_coding Homo_sapiens 0 1195
ENST00000495954 SCHIP1-012 nonsense_mediated_decay Homo_sapiens 0 479
ENST00000527095 IQCJ-SCHIP1-007 protein_coding Homo_sapiens 0 1197

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