C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: proteasome (prosome, macropain) subunit, alpha type 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000170836 Psma2-201 ENSMUSG00000015671 10090 + 13:14613242-14625671 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000170836
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000170836 46.352±12.21 50.906±5.40 51.759±7.76 70.345±21.63 45.946±27.49 36.864±5.14 40.425±7.54 55.699±17.04 87.131±47.44 51.110±7.25 37.200±9.18 81.556±26.52 140.947±41.96 21.288±1.46

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003QA CIL_0003QA_0002 CGP 13:14610301-14625671

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000502 IEA proteasome complex
GO:0000932 IDA cytoplasmic mRNA processing body
GO:0004298 IEA threonine-type endopeptidase activity
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005829 TAS cytosol
GO:0005839 IDA proteasome core complex
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0009615 IEA response to virus
GO:0019773 IEA proteasome core complex, alpha-subunit complex
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000155525 si:rp71-45k5.4-201 protein_coding Danio_rerio 0 481
ENSDART00000051750 si:rp71-45k5.4-001 protein_coding Danio_rerio 0 470
ENSDART00000156659 si:rp71-45k5.4-202 protein_coding Danio_rerio 0 424
ENST00000223321 PSMA2-001 protein_coding Homo_sapiens 0 985
ENST00000411875 PSMA2-002 nonsense_mediated_decay Homo_sapiens 0 566
ENST00000429685 PSMA2P3-001 processed_pseudogene Homo_sapiens 0 789
ENST00000433579 PSMA2-002 nonsense_mediated_decay Homo_sapiens 0 407
ENST00000436986 PSMA2-005 nonsense_mediated_decay Homo_sapiens 0 911
ENST00000442788 PSMA2-001 nonsense_mediated_decay Homo_sapiens 0 985
ENST00000445517 PSMA2-006 protein_coding Homo_sapiens 0 649
ENST00000457444 PSMA2-007 nonsense_mediated_decay Homo_sapiens 0 651

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