C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: geranylgeranyl diphosphate synthase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000170957 Ggps1-201 ENSMUSG00000021302 10090 - 13:14052449-14063401 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000170957
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000170957 4.393±1.67 3.776±0.93 30.893±0.00 2.993±0.69 2.690±0.30 1.703±0.00 3.905±0.35 3.073±1.38 2.309±0.00 2.245±0.40 5.170±3.75 9.027±0.90 3.218±0.43

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004161 IEA dimethylallyltranstransferase activity
GO:0004311 ISS farnesyltranstransferase activity
GO:0004337 IDA geranyltranstransferase activity
GO:0005737 IEA cytoplasm
GO:0006720 ISS isoprenoid metabolic process
GO:0033384 IEA geranyl diphosphate biosynthetic process
GO:0033386 IEA geranylgeranyl diphosphate biosynthetic process
GO:0045337 IEA farnesyl diphosphate biosynthetic process
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000282841 GGPS1-001 protein_coding Homo_sapiens 0 1219
ENST00000358966 GGPS1-201 protein_coding Homo_sapiens 0 1127
ENST00000391855 GGPS1-002 protein_coding Homo_sapiens 0 1050
ENST00000471812 GGPS1-005 protein_coding Homo_sapiens 0 937
ENST00000488594 GGPS1-003 protein_coding Homo_sapiens 0 1122
ENST00000497327 GGPS1-008 protein_coding Homo_sapiens 0 889

Loading