C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: syndecan 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000171158 Sdc1-201 ENSMUSG00000020592 10090 + 12:8771413-8793062 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000171158
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000171158 6.111±4.25 1.511±0.39 15.393±0.00 2.549±1.69 5.437±1.02 25.231±3.04 0.606±0.23 2.204±0.08 18.069±16.55 20.329±0.00 0.490±0.21 33.328±3.68 40.011±33.11 0.688±0.35

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001948 IPI glycoprotein binding
GO:0005576 TAS extracellular region
GO:0005796 TAS Golgi lumen
GO:0008092 IEA cytoskeletal protein binding
GO:0009897 IDA external side of plasma membrane
GO:0009986 IDA cell surface
GO:0016021 IEA integral component of membrane
GO:0048627 IDA myoblast development
GO:0060070 IMP canonical Wnt signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000254351 SDC1-001 protein_coding Homo_sapiens 0 1011
ENST00000381150 SDC1-201 protein_coding Homo_sapiens 0 1011
ENST00000403076 SDC1-002 protein_coding Homo_sapiens 0 346
ENST00000429035 SDC1-005 protein_coding Homo_sapiens 0 257
ENST00000447124 SDC1-004 nonsense_mediated_decay Homo_sapiens 4e-35 152
ENST00000482879 SDC1-006 processed_transcript Homo_sapiens 0 202

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