C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 6467
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000171547 Gm6467-201 ENSMUSG00000091580 10090 + 16:21896506-21897116 pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000171547
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000171547 7.826±0.78 0.826±0.35 0.920±0.18 0.601±0.37 4.781±0.82 2.249±0.98 2.557±0.90 3.008±2.01 1.113±0.67 3.367±0.19 0.237±0.13 5.959±2.77 0.181±0.08 1.143±0.37

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00056W CIL_00056W_0002 CGP 16:21761287-21931877
CIL_0008ZT CIL_0008ZT_0002 VISTA 16:21809929-22410861
CIL_0006RB CIL_0006RB_0002 CGP 16:21891969-21947552

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000022499 psmb3-001 protein_coding Danio_rerio 0 449
ENST00000457237 PSMB3P2-001 processed_pseudogene Homo_sapiens 0 662
ENST00000610434 PSMB3-006 protein_coding Homo_sapiens 0 592
ENST00000613870 PSMB3-002 nonsense_mediated_decay Homo_sapiens 0 442
ENST00000614132 PSMB3-005 retained_intron Homo_sapiens 0 355
ENST00000618159 PSMB3-004 retained_intron Homo_sapiens 6.99949e-42 174
ENST00000619426 PSMB3-001 protein_coding Homo_sapiens 0 795
ENST00000619951 PSMB3-201 protein_coding Homo_sapiens 0 795
ENST00000620309 PSMB3-003 nonsense_mediated_decay Homo_sapiens 0 444

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