C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DENN/MADD domain containing 2C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000172288 Dennd2c-001 ENSMUSG00000007379 10090 + 3:103127556-103169738 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000172288
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000172288 0.123±0.03 0.163±0.05 1.040±0.00 0.086±0.02 0.417±0.05 0.135±0.09 0.196±0.02 0.152±0.04 1.737±1.35 0.740±0.38 0.923±0.00 0.453±0.23 0.674±0.26 0.223±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006WT CIL_0006WT_0002 CGP 3:103074014-103169769
CIL_0003RY CIL_0003RY_0002 CGP 3:103102604-103179166

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component
GO:0017112 ISS Rab guanyl-nucleotide exchange factor activity
GO:0032851 ISS positive regulation of Rab GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000275884 DENND2A-001 protein_coding Homo_sapiens 0 222
ENST00000393274 DENND2C-005 protein_coding Homo_sapiens 0 2588
ENST00000393276 DENND2C-001 protein_coding Homo_sapiens 0 1845
ENST00000393277 DENND2C-201 protein_coding Homo_sapiens 0 2588
ENST00000461883 DENND2A-005 nonsense_mediated_decay Homo_sapiens 3e-38 165
ENST00000469373 DENND2A-010 protein_coding Homo_sapiens 1e-29 134
ENST00000481894 DENND2C-002 processed_transcript Homo_sapiens 0 1500
ENST00000492720 DENND2A-003 protein_coding Homo_sapiens 3e-38 165
ENST00000496613 DENND2A-002 protein_coding Homo_sapiens 0 222
ENST00000537639 DENND2A-201 protein_coding Homo_sapiens 0 222

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