C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003RY_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000073738-ENSDARG00000043631 CGP 7955 8:11629599-11698066
GeneTranscriptPositionBiotype
ENSDARG00000043631 (bcas2)
breast carcinoma amplified sequence 2 		ENSDART00000064066 (bcas2-001) 11690063-11698066 protein_coding
ENSDARG00000073738 (dennd2c)
DENN/MADD domain containing 2C 		ENSDART00000109877 (dennd2c-201) 11639750-11688121 protein_coding
ENSDART00000143844 (dennd2c-001) 11629599-11687778 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0003RY_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000007379-ENSMUSG00000005687 CGP 10090 3:103102604-103179166
GeneTranscriptPositionBiotype
ENSMUSG00000005687 (Bcas2)
breast carcinoma amplified sequence 2 		ENSMUST00000005830 (Bcas2-001) 103171655-103179152 protein_coding
ENSMUST00000135017 (Bcas2-002) 103171772-103179166 nonsense_mediated_decay
ENSMUST00000136937 (Bcas2-003) 103171703-103178825 retained_intron
ENSMUST00000139489 (Bcas2-004) 103171749-103178827 retained_intron
ENSMUST00000147042 (Bcas2-006) 103171785-103174547 retained_intron
ENSMUST00000155520 (Bcas2-005) 103171762-103178447 nonsense_mediated_decay
ENSMUSG00000007379 (Dennd2c)
DENN/MADD domain containing 2C 		ENSMUST00000166143 (Dennd2c-002) 103102660-103157272 retained_intron
ENSMUST00000172288 (Dennd2c-001) 103127556-103169738 protein_coding
ENSMUST00000173037 (Dennd2c-005) 103140968-103169731 retained_intron
ENSMUST00000173206 (Dennd2c-003) 103102604-103169769 protein_coding
ENSMUST00000174060 (Dennd2c-004) 103140326-103168664 processed_transcript
ENSMUST00000174486 (Dennd2c-006) 103149164-103158518 retained_intron

Mus musculus Ensembl (GRCm38)

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Expression Patterns

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Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003RY_0001ENSDARG00000043631ENSDART00000064066ENSDARG00000073738ENSDART00000109877ENSDART00000143844CIL_0003RY_0002ENSMUSG00000005687ENSMUST00000005830ENSMUST00000135017ENSMUST00000136937ENSMUST00000139489ENSMUST00000147042ENSMUST00000155520ENSMUSG00000007379ENSMUST00000166143ENSMUST00000172288ENSMUST00000173037ENSMUST00000173206ENSMUST00000174060ENSMUST00000174486
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003RY_0001ENSDARG00000043631ENSDART00000064066ENSDARG00000073738ENSDART00000109877ENSDART00000143844CIL_0003RY_0002ENSMUSG00000005687ENSMUST00000005830ENSMUST00000135017ENSMUST00000136937ENSMUST00000139489ENSMUST00000147042ENSMUST00000155520ENSMUSG00000007379ENSMUST00000166143ENSMUST00000172288ENSMUST00000173037ENSMUST00000173206ENSMUST00000174060ENSMUST00000174486
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000043631 ENSDART00000064066 N/A N/A N/A 16.749±11.07 N/A N/A 20.541±13.58 18.834±12.77 3.606±0.00 N/A 8.879±0.00 N/A N/A N/A
ENSDARG00000073738 ENSDART00000109877 N/A N/A N/A 1.195±0.00 N/A N/A 3.116±0.47 3.493±0.00 N/A N/A N/A N/A N/A N/A
ENSDART00000143844 N/A N/A N/A 1.190±0.53 N/A N/A 3.434±1.09 1.851±0.00 0.376±0.00 N/A 1.716±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000005687 ENSMUST00000005830 10.503±3.54 35.012±4.33 25.660±2.99 35.516±9.97 11.281±5.87 16.562±4.37 14.327±1.99 17.152±3.29 40.760±32.55 13.761±1.05 15.034±2.29 16.225±6.12 30.959±8.81 51.596±17.22
ENSMUST00000135017 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 17.588±0.00
ENSMUST00000136937 1.424±0.55 N/A 2.680±0.57 3.331±0.40 1.323±0.50 1.459±0.33 0.752±0.02 1.100±0.14 5.466±2.96 1.515±0.15 0.731±0.00 2.292±0.56 2.584±0.69 N/A
ENSMUST00000139489 1.763±0.73 N/A N/A 4.850±1.34 1.684±0.52 2.204±0.00 N/A N/A 0.968±0.00 2.384±0.33 N/A 1.538±0.16 N/A N/A
ENSMUST00000147042 N/A 13.878±2.03 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155520 4.143±0.81 4.905±0.00 12.744±2.56 58.130±55.25 7.166±2.77 4.964±0.36 N/A 5.301±1.73 19.259±22.36 6.621±0.34 8.124±1.97 24.955±48.02 87.470±92.33 253.367±0.00
ENSMUSG00000007379 ENSMUST00000166143 N/A 0.142±0.06 N/A N/A N/A 0.109±0.02 N/A N/A 0.032±0.00 N/A N/A N/A N/A N/A
ENSMUST00000172288 0.123±0.03 0.163±0.05 1.040±0.00 0.086±0.02 0.417±0.05 0.135±0.09 0.196±0.02 0.152±0.04 1.737±1.35 0.740±0.38 0.923±0.00 0.453±0.23 0.674±0.26 0.223±0.08
ENSMUST00000173037 0.207±0.10 0.057±0.00 0.931±0.02 0.134±0.02 0.783±0.26 0.133±0.01 0.098±0.02 0.140±0.00 1.415±1.21 0.747±0.43 0.217±0.05 0.339±0.10 0.314±0.02 0.378±0.00
ENSMUST00000173206 0.099±0.00 0.086±0.00 N/A 0.072±0.00 0.359±0.00 N/A 0.087±0.00 0.213±0.00 0.484±0.48 N/A N/A 0.160±0.00 0.217±0.00 0.228±0.00
ENSMUST00000174060 0.193±0.00 0.105±0.07 N/A 0.085±0.00 0.312±0.13 0.127±0.01 0.198±0.01 0.214±0.00 0.038±0.00 0.284±0.02 N/A 0.316±0.14 0.418±0.18 0.173±0.00
ENSMUST00000174486 N/A N/A N/A 0.205±0.00 0.385±0.00 0.299±0.09 N/A 0.139±0.04 0.034±0.00 N/A N/A 0.586±0.46 N/A N/A

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