C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high mobility group box transcription factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000172314 Hbp1-001 ENSMUSG00000002996 10090 - 12:31926254-31950535 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000172314
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000172314 48.966±12.75 44.753±27.20 25.073±7.61 20.139±11.78 43.923±15.73 18.956±2.35 27.811±1.55 36.370±8.60 25.288±9.13 34.204±3.77 6.613±1.07 64.887±36.29 21.489±10.67 10.526±2.65

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00063K CIL_00063K_0003 CGP 12:31654869-31937630
CIL_0002NG CIL_0002NG_0002 CGP 12:31706867-31950535
CIL_00055N CIL_00055N_0002 CGP 12:31926254-32061296

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0016055 IEA Wnt signaling pathway
GO:0043268 IEA positive regulation of potassium ion transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000222574 HBP1-001 protein_coding Homo_sapiens 0 3001
ENST00000347053 COG5-001 protein_coding Homo_sapiens 0 743
ENST00000461963 HBP1-010 processed_transcript Homo_sapiens 0 678
ENST00000463202 HBP1-012 retained_intron Homo_sapiens 0 2170
ENST00000463790 HBP1-014 nonsense_mediated_decay Homo_sapiens 0 300
ENST00000464009 HBP1-008 protein_coding Homo_sapiens 0 532
ENST00000468401 HBP1-006 protein_coding Homo_sapiens 2e-37 159
ENST00000468410 HBP1-002 protein_coding Homo_sapiens 0 3092
ENST00000478930 HBP1-004 protein_coding Homo_sapiens 0 339
ENST00000479011 HBP1-009 protein_coding Homo_sapiens 0 490
ENST00000483809 HBP1-011 retained_intron Homo_sapiens 0 387
ENST00000485846 HBP1-003 protein_coding Homo_sapiens 0 2344
ENST00000497535 HBP1-007 protein_coding Homo_sapiens 0 475
ENST00000498408 HBP1-013 protein_coding Homo_sapiens 0 1888
ENST00000607681 HBP1-015 protein_coding Homo_sapiens 0 649

Loading