C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: high mobility group box transcription factor 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000002996 Hbp1 10090 - 12:31926254-31950535 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000167458 Hbp1-002 31929383-31950223 protein_coding
  ENSMUST00000172314 Hbp1-001 31926254-31950535 protein_coding
  ENSMUST00000175666 Hbp1-005 31939751-31950234 retained_intron
  ENSMUST00000175686 Hbp1-004 31932833-31949608 protein_coding
  ENSMUST00000176084 Hbp1-006 31937045-31950210 protein_coding
  ENSMUST00000176103 Hbp1-003 31936459-31950221 protein_coding
  ENSMUST00000176138 Hbp1-009 31930924-31934803 retained_intron
  ENSMUST00000176520 Hbp1-007 31934342-31950170 protein_coding
  ENSMUST00000176643 Hbp1-008 31930813-31940407 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000172314
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000172314 48.966±12.75 44.753±27.20 25.073±7.61 20.139±11.78 43.923±15.73 18.956±2.35 27.811±1.55 36.370±8.60 25.288±9.13 34.204±3.77 6.613±1.07 64.887±36.29 21.489±10.67 10.526±2.65

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00063K CIL_00063K_0003 CGP 12:31654869-31937630
CIL_0002NG CIL_0002NG_0002 CGP 12:31706867-31950535
CIL_00055N CIL_00055N_0002 CGP 12:31926254-32061296

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0016055 IEA Wnt signaling pathway
GO:0043268 IEA positive regulation of potassium ion transport

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000028517 hbp1 HMG-box transcription factor 1 protein_coding Danio_rerio
ENSG00000105856 HBP1 HMG-box transcription factor 1 protein_coding Homo_sapiens

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