C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sorting nexin family member 21
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000172577 Snx21-005 ENSMUSG00000050373 10090 + 2:164785991-164793052 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000172577
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000172577 10.151±1.96 24.213±1.81 5.916±0.66 11.379±3.02 11.154±3.25 6.858±1.54 7.166±0.85 5.014±0.89 11.074±0.35 6.870±0.85 10.386±2.76 8.527±3.85 3.962±0.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000IO CIL_0000IO_0002 CGP 2:164777161-164793816
CIL_00002M CIL_00002M_0002 CGP 2:164785823-164804882

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000342644 SNX21-011 protein_coding Homo_sapiens 0 616
ENST00000344780 SNX21-004 processed_transcript Homo_sapiens 0 1321
ENST00000372541 SNX21-006 protein_coding Homo_sapiens 0 760
ENST00000372542 SNX21-003 protein_coding Homo_sapiens 0 1290
ENST00000372547 SNX21-001 retained_intron Homo_sapiens 0 935
ENST00000462307 SNX21-005 protein_coding Homo_sapiens 0 1007
ENST00000465997 SNX21-002 processed_transcript Homo_sapiens 0 610
ENST00000472219 SNX21-012 processed_transcript Homo_sapiens 0 859
ENST00000478230 SNX21-008 processed_transcript Homo_sapiens 0 697
ENST00000486336 SNX21-009 retained_intron Homo_sapiens 0 592
ENST00000491381 SNX21-010 protein_coding Homo_sapiens 0 1262

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