C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: integrin alpha 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000172791 Itga8-007 ENSMUSG00000026768 10090 - 2:12107479-12301892 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeColonKidneyLiverOvaryPlacentaTestisENSMUST00000172791
Transcript ID Adipose Colon Kidney Liver Ovary Placenta Testis
ENSMUST00000172791 0.138±0.00 0.454±0.00 0.701±0.00 0.323±0.00 0.504±0.07 0.052±0.00 0.270±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00088I CIL_00088I_0002 VISTA 2:11765185-12368019
CIL_0002HM CIL_0002HM_0002 CGP 2:12106632-12419469

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001656 IGI metanephros development
GO:0007155 IEA cell adhesion
GO:0007229 IEA integrin-mediated signaling pathway
GO:0007613 IMP memory
GO:0008305 IEA integrin complex
GO:0030030 IMP cell projection organization
GO:0030198 IMP extracellular matrix organization
GO:0030511 IGI positive regulation of transforming growth factor beta receptor signaling pathway
GO:0042472 IMP inner ear morphogenesis
GO:0045177 IDA apical part of cell

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000378076 ITGA8-001 protein_coding Homo_sapiens 0 3430
ENST00000468882 ITGA8-003 processed_transcript Homo_sapiens 0 303
ENST00000477064 ITGA8-002 processed_transcript Homo_sapiens 1.96182e-44 183

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