C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00088I_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
mm30 VISTA 9606 10:15191068-15798325
GeneTranscriptPositionBiotype
ENSG00000077943 (ITGA8)
integrin, alpha 8 		ENST00000378076 (ITGA8-001) 15513949-15720125 protein_coding
ENST00000468882 (ITGA8-003) 15611510-15644145 processed_transcript
ENST00000477064 (ITGA8-002) 15596513-15604270 processed_transcript
ENSG00000148468 (FAM171A1)
family with sequence similarity 171, member A1 		ENST00000378116 (FAM171A1-001) 15211643-15371059 protein_coding
ENST00000455654 (FAM171A1-002) 15248639-15371062 protein_coding
ENST00000477161 (FAM171A1-003) 15214171-15248707 processed_transcript
ENSG00000148481 (FAM188A)
family with sequence similarity 188, member A 		ENST00000277632 (FAM188A-001) 15778170-15860520 protein_coding
ENST00000378036 (FAM188A-003) 15778170-15818008 protein_coding
ENST00000418767 (FAM188A-006) 15788828-15837299 protein_coding
ENST00000436829 (FAM188A-005) 15796120-15838279 protein_coding
ENST00000476912 (FAM188A-007) 15778854-15782335 processed_transcript
ENST00000477891 (FAM188A-002) 15778170-15860498 processed_transcript
ENSG00000232739 (RP11-25G10.2)
 ENST00000433455 (RP11-25G10.2-001) 15237492-15241767 antisense

Homo sapiens Ensembl (GRCh38)

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CIL_00088I_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
mm30 VISTA 10090 2:11765185-12368019
GeneTranscriptPositionBiotype
ENSMUSG00000026767 (Fam188a)
family with sequence similarity 188, member A 		ENSMUST00000028105 (Fam188a-001) 12347265-12419469 protein_coding
ENSMUST00000124515 (Fam188a-009) 12401059-12419391 protein_coding
ENSMUST00000124603 (Fam188a-008) 12355307-12419443 nonsense_mediated_decay
ENSMUST00000129348 (Fam188a-012) 12386647-12410065 protein_coding
ENSMUST00000129489 (Fam188a-002) 12347263-12419444 nonsense_mediated_decay
ENSMUST00000129993 (Fam188a-007) 12386607-12419448 processed_transcript
ENSMUST00000130097 (Fam188a-003) 12399659-12419441 retained_intron
ENSMUST00000130225 (Fam188a-015) 12356785-12396248 retained_intron
ENSMUST00000135397 (Fam188a-016) 12347632-12356911 nonsense_mediated_decay
ENSMUST00000137082 (Fam188a-014) 12355332-12397885 retained_intron
ENSMUST00000144645 (Fam188a-004) 12347920-12419452 nonsense_mediated_decay
ENSMUST00000151529 (Fam188a-010) 12401070-12419249 nonsense_mediated_decay
ENSMUST00000153690 (Fam188a-011) 12400044-12410204 processed_transcript
ENSMUST00000154899 (Fam188a-006) 12348062-12419462 protein_coding
ENSMUST00000154952 (Fam188a-013) 12403998-12404729 processed_transcript
ENSMUST00000155530 (Fam188a-005) 12347266-12419435 nonsense_mediated_decay
ENSMUSG00000026768 (Itga8)
integrin alpha 8 		ENSMUST00000028106 (Itga8-001) 12106632-12301920 protein_coding
ENSMUST00000129370 (Itga8-004) 12182661-12193312 retained_intron
ENSMUST00000130548 (Itga8-003) 12286964-12301588 processed_transcript
ENSMUST00000141477 (Itga8-002) 12249800-12301920 retained_intron
ENSMUST00000148055 (Itga8-006) 12109070-12132552 protein_coding
ENSMUST00000172716 (Itga8-005) 12219710-12242464 processed_transcript
ENSMUST00000172791 (Itga8-007) 12107479-12301892 nonsense_mediated_decay
ENSMUSG00000047909 (Ankrd16)
ankyrin repeat domain 16 		ENSMUST00000056108 (Ankrd16-001) 11778491-11790325 protein_coding
ENSMUST00000125024 (Ankrd16-004) 11778527-11790303 retained_intron
ENSMUST00000128774 (Ankrd16-010) 11784320-11790296 nonsense_mediated_decay
ENSMUST00000130186 (Ankrd16-007) 11777876-11778859 processed_transcript
ENSMUST00000133664 (Ankrd16-008) 11781477-11789768 nonsense_mediated_decay
ENSMUST00000142622 (Ankrd16-011) 11786158-11790122 retained_intron
ENSMUST00000145547 (Ankrd16-009) 11783309-11790052 retained_intron
ENSMUST00000148498 (Ankrd16-005) 11784205-11790301 retained_intron
ENSMUST00000150213 (Ankrd16-002) 11778530-11790325 retained_intron
ENSMUST00000150320 (Ankrd16-003) 11778573-11781264 retained_intron
ENSMUST00000156067 (Ankrd16-006) 11778564-11790305 nonsense_mediated_decay
ENSMUSG00000058594 (Fbxo18)
F-box protein 18 		ENSMUST00000071564 (Fbxo18-001) 11742573-11777582 protein_coding
ENSMUST00000114813 (Fbxo18-002) 11742573-11777541 protein_coding
ENSMUST00000123717 (Fbxo18-003) 11747850-11777507 processed_transcript
ENSMUST00000123723 (Fbxo18-007) 11751676-11758473 processed_transcript
ENSMUST00000126543 (Fbxo18-004) 11764225-11777548 processed_transcript
ENSMUST00000131893 (Fbxo18-008) 11748437-11757556 protein_coding
ENSMUST00000136633 (Fbxo18-009) 11749455-11751766 processed_transcript
ENSMUST00000139292 (Fbxo18-011) 11742573-11743651 processed_transcript
ENSMUST00000151402 (Fbxo18-006) 11767630-11777507 processed_transcript
ENSMUST00000151862 (Fbxo18-005) 11767193-11777532 processed_transcript
ENSMUST00000155604 (Fbxo18-010) 11743667-11749229 processed_transcript
ENSMUSG00000080801 (Gm13310)
predicted gene 13310 		ENSMUST00000120962 (Gm13310-001) 12082612-12084003 processed_pseudogene
ENSMUSG00000086843 (E030013I19Rik)
RIKEN cDNA E030013I19 gene 		ENSMUST00000148089 (E030013I19Rik-002) 12301025-12311300 processed_transcript
ENSMUST00000150037 (E030013I19Rik-001) 12300947-12311300 processed_transcript

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00088I_0001ENSG00000077943ENST00000378076ENST00000468882ENST00000477064ENSG00000148468ENST00000378116ENST00000455654ENST00000477161ENSG00000148481ENST00000277632ENST00000378036ENST00000418767ENST00000436829ENST00000476912ENST00000477891ENSG00000232739ENST00000433455CIL_00088I_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00088I_0001ENSG00000077943ENST00000378076ENSG00000148468ENST00000378116ENSG00000148481ENST00000277632ENST00000436829ENST00000476912ENST00000477891ENSG00000232739ENST00000433455CIL_00088I_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
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000077943 ENST00000378076 1.630±0.00 21.553±0.00 1.525±0.00 0.768±0.38 0.691±0.08 1.502±0.65 1.467±0.58 2.065±1.84 0.122±0.00 10.151±2.48 0.980±0.47 1.803±0.70 0.070±0.07 3.563±3.26
ENST00000468882 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477064 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000148468 ENST00000378116 1.538±0.00 2.644±0.00 3.888±0.00 22.724±15.42 1.210±0.52 1.398±0.21 1.126±0.51 7.126±5.00 1.691±0.80 N/A N/A 6.611±2.70 3.217±1.05 1.490±0.04
ENST00000455654 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477161 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000148481 ENST00000277632 4.306±0.00 3.785±0.00 N/A 9.048±3.87 4.614±0.00 1.829±0.00 1.906±0.00 5.224±3.07 2.029±0.00 0.536±0.00 N/A 4.991±0.46 5.650±1.03 7.625±0.71
ENST00000378036 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000418767 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000436829 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.665±0.00 5.174±0.00 8.685±0.00
ENST00000476912 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.517±0.00 N/A N/A N/A
ENST00000477891 N/A 1.301±0.00 N/A 1.356±0.00 1.032±0.00 2.151±0.30 1.088±0.07 N/A 1.298±0.63 2.801±0.00 0.645±0.28 1.042±0.15 1.090±0.00 1.715±0.00
ENSG00000232739 ENST00000433455 N/A 0.205±0.00 1.044±0.00 0.139±0.07 0.384±0.28 0.132±0.00 0.039±0.00 0.013±0.00 0.142±0.12 N/A N/A 0.440±0.40 0.053±0.00 0.155±0.02
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000026767 ENSMUST00000028105 4.079±0.37 8.769±1.08 6.841±1.22 6.970±4.15 3.143±0.73 4.129±0.83 1.667±0.05 5.829±1.03 5.965±2.15 5.838±1.27 1.185±0.29 2.992±0.41 4.976±3.28 3.830±1.73
ENSMUST00000124515 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 24.866±0.00 N/A
ENSMUST00000124603 N/A N/A N/A N/A N/A 3.262±0.00 N/A N/A N/A N/A N/A 4.803±0.00 N/A N/A
ENSMUST00000129348 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 18.748±0.00 17.312±1.27 6.094±0.00
ENSMUST00000129489 N/A N/A N/A 1.035±0.00 N/A N/A N/A N/A N/A N/A 1.003±0.00 2.087±0.68 N/A N/A
ENSMUST00000129993 29.284±2.69 65.281±23.99 N/A 39.873±0.00 33.552±4.67 40.410±11.90 8.072±1.86 35.152±11.60 22.039±3.19 42.524±3.86 N/A 15.902±7.97 N/A 22.163±1.28
ENSMUST00000130097 N/A N/A N/A N/A N/A 4.324±0.00 0.879±0.00 N/A N/A 3.576±0.00 N/A 6.736±2.65 N/A N/A
ENSMUST00000130225 N/A N/A N/A 14.987±0.00 N/A N/A N/A N/A N/A N/A N/A 24.236±0.00 19.196±2.04 7.409±0.00
ENSMUST00000135397 N/A N/A N/A N/A 2.263±0.00 N/A N/A N/A N/A N/A 1.402±0.00 N/A N/A N/A
ENSMUST00000137082 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144645 2.490±0.33 N/A N/A N/A 4.975±0.00 5.322±0.64 1.021±0.24 4.349±0.90 3.604±0.42 4.650±0.64 N/A 4.167±0.85 N/A 2.422±0.00
ENSMUST00000151529 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000153690 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 8.514±0.00 2.885±0.00
ENSMUST00000154899 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154952 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155530 N/A N/A N/A 1.025±0.00 3.259±2.11 4.833±0.00 0.917±0.21 N/A N/A N/A 0.910±0.29 2.679±0.00 N/A N/A
ENSMUSG00000026768 ENSMUST00000028106 1.581±1.40 1.299±0.10 1.780±0.01 0.540±0.13 1.084±0.31 0.902±0.28 2.098±0.09 3.820±0.34 0.800±0.15 22.193±1.34 0.195±0.10 1.330±0.54 0.524±0.39 0.256±0.14
ENSMUST00000129370 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 6.815±0.00 1.891±1.54 N/A
ENSMUST00000130548 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141477 N/A 2.473±0.27 N/A N/A N/A N/A N/A N/A 0.434±0.08 N/A N/A N/A N/A N/A
ENSMUST00000148055 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000172716 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000172791 0.138±0.00 N/A N/A N/A N/A 0.454±0.00 N/A 0.701±0.00 0.323±0.00 N/A N/A 0.504±0.07 0.052±0.00 0.270±0.00
ENSMUSG00000047909 ENSMUST00000056108 8.218±1.83 6.593±1.15 8.615±2.21 8.086±0.00 8.300±1.37 6.777±1.75 3.045±0.88 6.368±1.66 3.685±1.14 6.316±2.08 2.708±0.56 11.108±2.57 3.043±0.22 2.520±0.38
ENSMUST00000125024 2.914±0.45 N/A 4.880±0.32 4.053±0.49 3.429±0.74 3.142±0.49 0.933±0.15 1.540±0.00 1.723±0.24 2.610±0.48 N/A 3.741±1.22 2.818±1.01 0.985±0.17
ENSMUST00000128774 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130186 N/A 9.198±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 12.169±1.03 N/A N/A
ENSMUST00000133664 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142622 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000145547 10.879±1.71 8.808±0.31 16.921±3.61 13.718±2.62 10.570±2.67 10.283±1.85 2.588±0.95 8.196±1.64 5.691±1.74 7.847±0.99 N/A 13.130±2.61 5.847±0.00 3.104±0.42
ENSMUST00000148498 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.838±0.98 N/A N/A N/A
ENSMUST00000150213 2.813±0.00 N/A 6.546±1.56 9.612±4.64 2.792±0.00 2.986±0.71 N/A 2.544±0.63 2.714±0.68 2.510±0.23 0.813±0.00 7.258±2.90 3.364±0.41 0.979±0.26
ENSMUST00000150320 4.975±0.00 N/A N/A 8.087±0.72 3.825±0.00 N/A 1.521±0.25 N/A 2.625±0.10 3.679±0.33 1.324±0.33 N/A 2.708±0.07 1.789±0.33
ENSMUST00000156067 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000058594 ENSMUST00000071564 23.102±1.01 16.737±2.80 16.567±1.86 24.889±8.66 18.655±3.02 14.496±4.02 15.495±1.14 20.392±3.07 6.127±2.24 13.463±2.98 5.126±1.55 15.091±4.40 14.081±2.37 4.549±1.13
ENSMUST00000114813 4.567±0.16 6.288±1.93 3.599±0.00 N/A 5.229±0.00 4.163±0.48 N/A 2.797±0.15 1.385±0.08 N/A 1.432±0.34 8.088±0.03 4.686±1.74 1.320±0.21
ENSMUST00000123717 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000123723 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000126543 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000131893 N/A N/A N/A 77.066±0.00 N/A N/A N/A N/A N/A N/A N/A 114.607±0.00 78.583±8.73 17.177±0.00
ENSMUST00000136633 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000139292 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151402 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151862 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000155604 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000080801 ENSMUST00000120962 N/A N/A 0.006±0.00 0.151±0.00 N/A N/A N/A N/A 0.464±0.46 N/A N/A N/A 0.016±0.01 0.015±0.00
ENSMUSG00000086843 ENSMUST00000148089 0.944±0.82 4.954±0.72 N/A N/A 1.474±0.72 2.180±0.28 1.327±0.04 2.015±0.49 0.388±0.13 21.197±6.98 0.078±0.00 1.845±0.65 N/A 0.143±0.01
ENSMUST00000150037 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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