C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
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| Description: | ligase III, DNA, ATP-dependent | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENSMUST00000172837  |
Lig3-012 |
ENSMUSG00000020697 |
10090 | + |
11:82798349-82804274  |
protein_coding |
Expression PatternsNo expression data. |
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_00055Q | CIL_00055Q_0002 | CGP | 11:82764345-82804274 |
| CIL_00055O | CIL_00055O_0002 | CGP | 11:82781108-82871210 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0000794 | IDA | condensed nuclear chromosome |
| GO:0000795 | IDA | synaptonemal complex |
| GO:0003910 | IBA | DNA ligase (ATP) activity |
| GO:0005515 | IPI | protein binding |
| GO:0005634 | IBA | nucleus |
| GO:0005694 | IBA | chromosome |
| GO:0006266 | IBA | DNA ligation |
| GO:0006273 | IBA | lagging strand elongation |
| GO:0006289 | IBA | nucleotide-excision repair |
| GO:0006303 | IMP | double-strand break repair via nonhomologous end joining |
| GO:0043504 | IMP | mitochondrial DNA repair |
| GO:0045910 | IMP | negative regulation of DNA recombination |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENST00000378526
|
LIG3-001 | protein_coding | Homo_sapiens | 0 | 427 |
|
ENST00000592244
|
LIG3-016 | retained_intron | Homo_sapiens | 3e-29 | 132 |
|
ENST00000593099
|
LIG3-003 | retained_intron | Homo_sapiens | 5.99994e-41 | 174 |
