C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ligase III, DNA, ATP-dependent
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000378526 LIG3-001 ENSG00000005156 9606 + 17:34980494-35009743 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonLiverLungMuscleOvaryENST00000378526
Transcript ID Bladder Brain Breast Colon Liver Lung Muscle Ovary
ENST00000378526 0.742±0.00 1.248±0.00 1.206±0.00 1.154±0.00 1.216±0.00 1.029±0.00 1.184±0.00 2.186±0.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00055V CIL_00055V_0001 CGP 17:34580749-34981078
CIL_000745 CIL_000745_0001 CGP 17:34927859-34981078
CIL_00055Q CIL_00055Q_0001 CGP 17:34961530-35009743
CIL_00055O CIL_00055O_0001 CGP 17:34980494-35089319

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000794 IEA condensed nuclear chromosome
GO:0000795 IEA synaptonemal complex
GO:0003677 IEA DNA binding
GO:0003909 IDA DNA ligase activity
GO:0003910 IEA:IBA DNA ligase (ATP) activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005694 IBA chromosome
GO:0006273 IBA lagging strand elongation
GO:0006281 TAS:IEA DNA repair
GO:0006284 TAS base-excision repair
GO:0006288 IEA base-excision repair, DNA ligation
GO:0006289 IBA nucleotide-excision repair
GO:0006303 IEA double-strand break repair via nonhomologous end joining
GO:0006310 IEA DNA recombination
GO:0007131 TAS reciprocal meiotic recombination
GO:0007283 TAS spermatogenesis
GO:0008270 IEA zinc ion binding
GO:0043504 IEA mitochondrial DNA repair
GO:0045910 IEA negative regulation of DNA recombination
GO:0071897 IEA DNA biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000092849 Lig3-001 protein_coding Mus_musculus 0 3570
ENSMUST00000173727 Lig3-011 protein_coding Mus_musculus 0 3567
ENSMUST00000173347 Lig3-007 protein_coding Mus_musculus 0 3555
ENSMUST00000173722 Lig3-009 protein_coding Mus_musculus 0 3548
ENSMUST00000021039 Lig3-201 protein_coding Mus_musculus 0 3520
ENSMUST00000080461 Lig3-002 protein_coding Mus_musculus 0 3275
ENSMUST00000172609 Lig3-010 retained_intron Mus_musculus 0 2372
ENSMUST00000173009 Lig3-006 protein_coding Mus_musculus 0 1471
ENSMUST00000131537 Lig3-008 protein_coding Mus_musculus 0 1459
ENSMUST00000155818 Lig3-005 retained_intron Mus_musculus 0 839
ENSMUST00000043937 Ostc-201 protein_coding Mus_musculus 0 518
ENSMUST00000172837 Lig3-012 protein_coding Mus_musculus 0 427
ENSMUST00000074515 Rffl-001 protein_coding Mus_musculus 0 200
ENSMUST00000071152 Rffl-201 protein_coding Mus_musculus 2.00386e-43 183
ENSMUST00000108173 Rffl-203 protein_coding Mus_musculus 2.00386e-43 183
ENSMUST00000093975 Rffl-202 protein_coding Mus_musculus 2.00386e-43 183

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