C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sorting nexin family member 21
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000173945 Snx21-006 ENSMUSG00000050373 10090 + 2:164790411-164793816 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastMuscleOvaryPlacentaENSMUST00000173945
Transcript ID Bladder Breast Muscle Ovary Placenta
ENSMUST00000173945 2.247±0.00 3.502±0.00 0.768±0.00 2.761±0.66 2.994±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000IO CIL_0000IO_0002 CGP 2:164777161-164793816
CIL_00002M CIL_00002M_0002 CGP 2:164785823-164804882

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000342644 SNX21-011 protein_coding Homo_sapiens 0 215
ENST00000344780 SNX21-004 processed_transcript Homo_sapiens 0 859
ENST00000372541 SNX21-006 protein_coding Homo_sapiens 0 392
ENST00000372542 SNX21-003 protein_coding Homo_sapiens 0 861
ENST00000372547 SNX21-001 retained_intron Homo_sapiens 0 870
ENST00000462307 SNX21-005 protein_coding Homo_sapiens 0 667
ENST00000465997 SNX21-002 processed_transcript Homo_sapiens 0 675
ENST00000472219 SNX21-012 processed_transcript Homo_sapiens 0 926
ENST00000478230 SNX21-008 processed_transcript Homo_sapiens 0 708
ENST00000486336 SNX21-009 retained_intron Homo_sapiens 0 468
ENST00000491381 SNX21-010 protein_coding Homo_sapiens 0 861

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