C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: sorting nexin family member 21
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000174070 Snx21-004 ENSMUSG00000050373 10090 + 2:164785823-164792487 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLungMuscleOvaryPlacentaENSMUST00000174070
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Lung Muscle Ovary Placenta
ENSMUST00000174070 6.400±1.11 13.261±3.92 8.849±1.34 6.356±0.54 11.046±2.44 5.360±0.00 8.731±1.88 5.789±0.58 11.687±1.68 8.627±0.29

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000IO CIL_0000IO_0002 CGP 2:164777161-164793816
CIL_00002M CIL_00002M_0002 CGP 2:164785823-164804882

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000342644 SNX21-011 protein_coding Homo_sapiens 0 610
ENST00000344780 SNX21-004 processed_transcript Homo_sapiens 0 1238
ENST00000372541 SNX21-006 protein_coding Homo_sapiens 0 859
ENST00000372542 SNX21-003 protein_coding Homo_sapiens 0 1284
ENST00000372547 SNX21-001 retained_intron Homo_sapiens 0 1035
ENST00000462307 SNX21-005 protein_coding Homo_sapiens 0 1107
ENST00000465997 SNX21-002 processed_transcript Homo_sapiens 0 619
ENST00000472219 SNX21-012 processed_transcript Homo_sapiens 0 870
ENST00000478230 SNX21-008 processed_transcript Homo_sapiens 0 708
ENST00000486336 SNX21-009 retained_intron Homo_sapiens 0 586
ENST00000491381 SNX21-010 protein_coding Homo_sapiens 0 1256

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