C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RIKEN cDNA A230050P20 gene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000175820 A230050P20Rik-002 ENSMUSG00000038884 10090 + 9:20868658-20874307 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000175820
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000175820 4.554±2.52 12.565±3.96 9.926±2.46 2.234±2.06 10.434±3.06 5.307±1.16 1.603±0.28 1.913±1.03 9.368±6.09 10.473±0.76 0.713±0.18 12.247±3.38 2.685±1.51 0.570±0.19

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004G7 CIL_0004G7_0002 CGP 9:20818504-20874307
CIL_0004G5 CIL_0004G5_0002 CGP 9:20868642-20879727

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000253109 ANGPTL6-001 protein_coding Homo_sapiens 2e-38 165
ENST00000253110 C19orf66-001 protein_coding Homo_sapiens 0 761
ENST00000397881 C19orf66-004 protein_coding Homo_sapiens 0 756
ENST00000585919 C19orf66-003 retained_intron Homo_sapiens 0 219
ENST00000586730 C19orf66-005 retained_intron Homo_sapiens 4.06377e-44 183
ENST00000587710 C19orf66-008 nonsense_mediated_decay Homo_sapiens 0 372
ENST00000589181 ANGPTL6-003 protein_coding Homo_sapiens 1e-38 165
ENST00000590378 C19orf66-010 protein_coding Homo_sapiens 1.4013e-45 187
ENST00000591813 C19orf66-002 protein_coding Homo_sapiens 0 219
ENST00000592551 C19orf66-006 retained_intron Homo_sapiens 0 231
ENST00000592641 ANGPTL6-002 protein_coding Homo_sapiens 1e-38 165

Loading