C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: active BCR-related gene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000176179 Abr-011 ENSMUSG00000017631 10090 - 11:76479003-76577727 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00012J CIL_00012J_0002 CGP 11:76406952-76622314
CIL_0001Q6 CIL_0001Q6_0002 CGP 11:76416734-76673676

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005089 IEA Rho guanyl-nucleotide exchange factor activity
GO:0005096 TAS GTPase activator activity
GO:0005829 IDA cytosol
GO:0005886 IDA plasma membrane
GO:0007420 IGI brain development
GO:0030036 IGI actin cytoskeleton organization
GO:0030336 IGI negative regulation of cell migration
GO:0030675 IDA Rac GTPase activator activity
GO:0032496 IMP response to lipopolysaccharide
GO:0032855 IDA positive regulation of Rac GTPase activity
GO:0042472 IGI inner ear morphogenesis
GO:0043314 IGI negative regulation of neutrophil degranulation
GO:0043547 TAS positive regulation of GTPase activity
GO:0050728 IMP negative regulation of inflammatory response
GO:0050766 IGI positive regulation of phagocytosis
GO:0050885 IGI neuromuscular process controlling balance

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000291107 ABR-003 protein_coding Homo_sapiens 0 398
ENST00000302538 ABR-001 protein_coding Homo_sapiens 0 616
ENST00000544583 ABR-004 protein_coding Homo_sapiens 0 713
ENST00000570441 ABR-030 protein_coding Homo_sapiens 0 399
ENST00000570525 ABR-031 protein_coding Homo_sapiens 0 436
ENST00000573325 ABR-028 retained_intron Homo_sapiens 2e-37 159
ENST00000574139 ABR-034 protein_coding Homo_sapiens 0 619
ENST00000574266 ABR-032 protein_coding Homo_sapiens 0 431
ENST00000574437 ABR-002 protein_coding Homo_sapiens 0 619
ENST00000575934 ABR-029 protein_coding Homo_sapiens 0 276
ENST00000611021 ABR-204 protein_coding Homo_sapiens 0 398
ENST00000612118 ABR-205 protein_coding Homo_sapiens 0 616
ENST00000613981 ABR-202 protein_coding Homo_sapiens 0 398
ENST00000620619 ABR-208 protein_coding Homo_sapiens 0 713

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