C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: active BCR-related
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000574139 ABR-034 ENSG00000159842 9606 - 17:1091669-1229004 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonENST00000574139
Transcript ID Colon
ENST00000574139 30.471±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001Q9 CIL_0001Q9_0001 CGP 17:799313-1003671
CIL_00012J CIL_00012J_0001 CGP 17:997117-1229021
CIL_0001Q6 CIL_0001Q6_0001 CGP 17:1003518-1271460

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005089 IEA Rho guanyl-nucleotide exchange factor activity
GO:0035023 IEA regulation of Rho protein signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000155035 Abr-008 protein_coding Mus_musculus 0 640
ENSMUST00000094012 Abr-002 protein_coding Mus_musculus 0 628
ENSMUST00000072740 Abr-001 protein_coding Mus_musculus 0 623
ENSMUST00000176179 Abr-011 protein_coding Mus_musculus 0 619
ENSMUST00000108407 Abr-201 protein_coding Mus_musculus 0 525
ENSMUST00000176024 Abr-012 protein_coding Mus_musculus 0 451
ENSMUST00000151526 Abr-004 protein_coding Mus_musculus 0 405
ENSMUST00000141442 Abr-010 retained_intron Mus_musculus 0 405
ENSMUST00000108408 Abr-003 protein_coding Mus_musculus 0 405
ENSMUST00000137261 Abr-005 processed_transcript Mus_musculus 7e-28 128

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