C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SATB homeobox 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000260926 SATB2-003 ENSG00000119042 9606 - 2:199269508-199465108 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonHeartLiverMusclePlacentaENST00000260926
Transcript ID Brain Colon Heart Liver Muscle Placenta
ENST00000260926 1.534±0.00 9.505±0.00 0.040±0.00 0.405±0.00 0.148±0.00 0.127±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000JH CIL_0000JH_0002 CGP 2:197804702-199471266
CIL_0007O4 CIL_0007O4_0002 UCNEbase 2:198996573-199448043

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000114415 Satb2-001 protein_coding Mus_musculus 0 3784
ENSMUST00000042857 Satb2-002 protein_coding Mus_musculus 0 3173
ENSMUST00000177424 Satb2-003 protein_coding Mus_musculus 0 2632
ENSMUST00000177282 Satb2-004 protein_coding Mus_musculus 0 508
ENSMUST00000176759 Satb2-005 protein_coding Mus_musculus 0 370

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