C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SATB homeobox 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000417098 SATB2-001 ENSG00000119042 9606 - 2:199269500-199458096 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartMuscleOvaryPlacentaTestisENST00000417098
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Muscle Ovary Placenta Testis
ENST00000417098 0.544±0.00 0.345±0.00 1.447±0.00 3.978±1.12 1.656±0.00 14.880±0.00 0.105±0.00 0.235±0.00 0.433±0.32 0.200±0.10 0.912±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000JH CIL_0000JH_0002 CGP 2:197804702-199471266
CIL_0007O4 CIL_0007O4_0002 UCNEbase 2:198996573-199448043

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000118 IEA histone deacetylase complex
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0001764 IEA neuron migration
GO:0002076 IEA osteoblast development
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 IEA transcription factor complex
GO:0005737 IDA cytoplasm
GO:0006338 IEA chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0009880 IEA embryonic pattern specification
GO:0010468 IEA regulation of gene expression
GO:0021902 IEA commitment of neuronal cell to specific neuron type in forebrain
GO:0043565 IEA sequence-specific DNA binding
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0048704 IEA embryonic skeletal system morphogenesis
GO:0051216 IEA cartilage development
GO:0060021 IEA palate development
GO:0071310 IEA cellular response to organic substance

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000114415 Satb2-001 protein_coding Mus_musculus 0 4625
ENSMUST00000042857 Satb2-002 protein_coding Mus_musculus 0 3173
ENSMUST00000177424 Satb2-003 protein_coding Mus_musculus 0 2632
ENSMUST00000176759 Satb2-005 protein_coding Mus_musculus 0 370
ENSMUST00000177282 Satb2-004 protein_coding Mus_musculus 0 217

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