C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: forkhead box P1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000493089 FOXP1-002 ENSG00000114861 9606 - 3:70959204-71583753 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastKidneyLiverLungMuscleOvaryENST00000493089
Transcript ID Bladder Brain Breast Kidney Liver Lung Muscle Ovary
ENST00000493089 1.458±0.00 3.169±0.00 4.196±0.00 3.199±0.00 6.627±0.00 8.743±0.00 0.460±0.00 3.854±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007L4 CIL_0007L4_0001 UCNEbase 3:70042617-71525233
CIL_0009A7 CIL_0009A7_0001 VISTA 3:70522165-71123806
CIL_0008N6 CIL_0008N6_0001 VISTA 3:70677078-71277613
CIL_00096K CIL_00096K_0001 VISTA 3:70685238-71286279
CIL_0007PZ CIL_0007PZ_0001 VISTA 3:70703225-71304095
CIL_0008OZ CIL_0008OZ_0001 VISTA 3:70750006-71351700
CIL_00086J CIL_00086J_0001 VISTA 3:70804405-71405902
CIL_000840 CIL_000840_0001 VISTA 3:70837240-71439432
CIL_0007XT CIL_0007XT_0001 VISTA 3:70904519-71505862
CIL_0007SI CIL_0007SI_0001 VISTA 3:70928161-71529805
CIL_0008LZ CIL_0008LZ_0001 VISTA 3:70941267-71543433

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0043565 IEA sequence-specific DNA binding
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000176850 Foxp1-027 protein_coding Mus_musculus 0 3133
ENSMUST00000176632 Foxp1-026 protein_coding Mus_musculus 0 3114
ENSMUST00000113326 Foxp1-004 protein_coding Mus_musculus 0 2913
ENSMUST00000176565 Foxp1-014 protein_coding Mus_musculus 0 2747
ENSMUST00000177307 Foxp1-020 protein_coding Mus_musculus 0 2743
ENSMUST00000113322 Foxp1-201 protein_coding Mus_musculus 0 2719
ENSMUST00000113324 Foxp1-007 protein_coding Mus_musculus 0 2715
ENSMUST00000113328 Foxp1-006 protein_coding Mus_musculus 0 2710
ENSMUST00000074346 Foxp1-001 protein_coding Mus_musculus 0 2695
ENSMUST00000177437 Foxp1-021 protein_coding Mus_musculus 0 2623
ENSMUST00000177229 Foxp1-023 protein_coding Mus_musculus 0 2619
ENSMUST00000177230 Foxp1-024 nonsense_mediated_decay Mus_musculus 0 2294
ENSMUST00000113329 Foxp1-008 protein_coding Mus_musculus 0 1914
ENSMUST00000124058 Foxp1-011 protein_coding Mus_musculus 0 1541
ENSMUST00000154163 Foxp1-012 protein_coding Mus_musculus 0 819
ENSMUST00000142164 Foxp1-010 retained_intron Mus_musculus 0 688
ENSMUST00000175886 Foxp1-019 protein_coding Mus_musculus 0 641
ENSMUST00000123992 Foxp1-013 protein_coding Mus_musculus 0 571
ENSMUST00000113321 Foxp1-009 protein_coding Mus_musculus 0 555
ENSMUST00000177507 Foxp1-022 protein_coding Mus_musculus 0 492
ENSMUST00000115477 Foxp2-201 protein_coding Mus_musculus 0 468
ENSMUST00000115472 Foxp2-007 protein_coding Mus_musculus 0 468
ENSMUST00000115474 Foxp2-006 protein_coding Mus_musculus 0 468
ENSMUST00000031545 Foxp2-001 protein_coding Mus_musculus 0 468
ENSMUST00000177227 Foxp1-033 protein_coding Mus_musculus 0 405
ENSMUST00000175880 Foxp1-028 retained_intron Mus_musculus 0 316
ENSMUST00000177235 Foxp1-017 processed_transcript Mus_musculus 0 303
ENSMUST00000155466 Gm20696-001 nonsense_mediated_decay Mus_musculus 0 303
ENSMUST00000175838 Foxp1-032 processed_transcript Mus_musculus 0 300
ENSMUST00000177208 Foxp1-030 protein_coding Mus_musculus 0 270
ENSMUST00000131967 Foxp1-003 retained_intron Mus_musculus 0 244
ENSMUST00000075832 Foxp1-005 processed_transcript Mus_musculus 0 243
ENSMUST00000115475 Foxp2-015 nonsense_mediated_decay Mus_musculus 0 231
ENSMUST00000138754 Foxp1-002 retained_intron Mus_musculus 0 217
ENSMUST00000175670 Foxp1-029 protein_coding Mus_musculus 1.96182e-44 185

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