C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transmembrane protein 52
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000178238 Tmem52-202 ENSMUSG00000023153 10090 + 4:155469114-155470858 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastHeartKidneyMuscleOvaryTestisENSMUST00000178238
Transcript ID Adipose Adrenal Brain Breast Heart Kidney Muscle Ovary Testis
ENSMUST00000178238 0.179±0.01 6.238±2.24 0.035±0.00 1.462±1.32 0.286±0.15 0.656±0.09 5.530±1.35 1.563±0.63 1.802±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007QV CIL_0007QV_0002 VISTA 4:154934679-155536167

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000310991 TMEM52-001 protein_coding Homo_sapiens 0 375
ENST00000378598 TMEM52-005 protein_coding Homo_sapiens 0.000000001 68
ENST00000416272 TMEM52-002 protein_coding Homo_sapiens 2e-20 102
ENST00000470931 TMEM52-003 nonsense_mediated_decay Homo_sapiens 0 379
ENST00000602604 TMEM52-006 retained_intron Homo_sapiens 0.0000000006 69

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