C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: La ribonucleoprotein domain family, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000178636 Larp1-201 ENSMUSG00000037331 10090 + 11:58009064-58062034 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000178636
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000178636 22.560±2.98 19.958±3.66 16.697±1.56 18.815±3.47 16.832±3.91 21.016±2.86 11.554±0.52 16.811±0.73 20.409±4.81 16.596±0.99 22.259±0.90 22.482±4.76 24.453±8.30 45.242±13.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099I CIL_00099I_0002 VISTA 11:57547462-58147793
CIL_00088D CIL_00088D_0002 VISTA 11:57627590-58231336
CIL_00023W CIL_00023W_0002 CGP 11:57828705-58062034

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000339 ISS RNA cap binding
GO:0003730 ISS mRNA 3'-UTR binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005737 ISS cytoplasm
GO:0006413 ISS translational initiation
GO:0008190 ISS eukaryotic initiation factor 4E binding
GO:0008283 ISS cell proliferation
GO:0008494 ISS translation activator activity
GO:0016020 IEA membrane
GO:0016239 IEA positive regulation of macroautophagy
GO:0031369 ISS translation initiation factor binding
GO:0031929 ISS TOR signaling
GO:0031931 ISS TORC1 complex
GO:0044822 IEA poly(A) RNA binding
GO:0045727 IEA positive regulation of translation
GO:0048027 ISS mRNA 5'-UTR binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000336314 LARP1-001 protein_coding Homo_sapiens 0 3897
ENST00000517616 LARP1-011 protein_coding Homo_sapiens 0 313
ENST00000518194 LARP1-010 protein_coding Homo_sapiens 0 315
ENST00000518297 LARP1-002 protein_coding Homo_sapiens 0 2636
ENST00000518595 LARP1-013 retained_intron Homo_sapiens 0 911
ENST00000518677 LARP1-005 protein_coding Homo_sapiens 0 614
ENST00000518742 LARP1-014 protein_coding Homo_sapiens 0 616
ENST00000519194 LARP1-015 retained_intron Homo_sapiens 0 593
ENST00000519931 LARP1-009 protein_coding Homo_sapiens 0 547
ENST00000521577 LARP1-008 nonsense_mediated_decay Homo_sapiens 0 745
ENST00000523163 LARP1-012 protein_coding Homo_sapiens 0 841
ENST00000524187 LARP1-016 retained_intron Homo_sapiens 0 235
ENST00000524248 LARP1-003 protein_coding Homo_sapiens 0 2566

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