C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: La ribonucleoprotein domain family, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000336314 LARP1-001 ENSG00000155506 9606 + 5:154712902-154817607 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastKidneyLiverLungMuscleOvaryPlacentaTestisENST00000336314
Transcript ID Brain Breast Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000336314 32.154±0.00 12.958±0.00 13.777±0.00 4.815±0.00 3.647±0.00 0.974±0.00 16.921±16.87 7.419±0.00 3.348±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099I CIL_00099I_0001 VISTA 5:154192067-154792416
CIL_00088D CIL_00088D_0001 VISTA 5:154298500-154906275
CIL_00023W CIL_00023W_0001 CGP 5:154474972-154817607

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000339 IDA RNA cap binding
GO:0003730 IDA mRNA 3'-UTR binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006413 IMP translational initiation
GO:0008190 IPI eukaryotic initiation factor 4E binding
GO:0008283 IMP cell proliferation
GO:0008494 IMP translation activator activity
GO:0016020 IDA membrane
GO:0016239 IMP positive regulation of macroautophagy
GO:0031369 IDA translation initiation factor binding
GO:0031929 IMP TOR signaling
GO:0031931 IDA TORC1 complex
GO:0044822 IDA poly(A) RNA binding
GO:0045727 IMP positive regulation of translation
GO:0048027 IDA mRNA 5'-UTR binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000071487 Larp1-001 protein_coding Mus_musculus 0 3903
ENSMUST00000178636 Larp1-201 protein_coding Mus_musculus 0 3897
ENSMUST00000118143 Gm16425-001 processed_pseudogene Mus_musculus 0 2758
ENSDART00000015938 larp1-201 protein_coding Danio_rerio 0 756
ENSDART00000151738 larp1-001 protein_coding Danio_rerio 0 756
ENSMUST00000140500 Larp1-003 retained_intron Mus_musculus 0 446

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