C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00023W_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000113196-ENSG00000155506 CGP 9606 5:154474972-154817607
GeneTranscriptPositionBiotype
ENSG00000113196 (HAND1)
heart and neural crest derivatives expressed 1 		ENST00000231121 (HAND1-001) 154474972-154478264 protein_coding
ENSG00000155506 (LARP1)
La ribonucleoprotein domain family, member 1 		ENST00000336314 (LARP1-001) 154712902-154817607 protein_coding
ENST00000517616 (LARP1-011) 154755985-154793649 protein_coding
ENST00000518194 (LARP1-010) 154792774-154795186 protein_coding
ENST00000518297 (LARP1-002) 154755575-154804208 protein_coding
ENST00000518595 (LARP1-013) 154794046-154802078 retained_intron
ENST00000518677 (LARP1-005) 154802350-154805113 protein_coding
ENST00000518742 (LARP1-014) 154794210-154802083 protein_coding
ENST00000518892 (LARP1-007) 154756003-154786684 protein_coding
ENST00000519194 (LARP1-015) 154805754-154811351 retained_intron
ENST00000519931 (LARP1-009) 154756411-154793824 protein_coding
ENST00000521577 (LARP1-008) 154756174-154794195 nonsense_mediated_decay
ENST00000522272 (LARP1-006) 154804221-154805240 protein_coding
ENST00000523163 (LARP1-012) 154792733-154802009 protein_coding
ENST00000524187 (LARP1-016) 154811388-154813920 retained_intron
ENST00000524248 (LARP1-003) 154757174-154804208 protein_coding
ENSG00000221552 (MIR1303)
microRNA 1303 		ENST00000408625 (MIR1303-201) 154685776-154685861 miRNA
ENSG00000241187 (CTC-209L16.1)
 ENST00000463655 (CTC-209L16.1-001) 154729231-154729694 processed_pseudogene
ENSG00000253146 (CIR1P1)
corepressor interacting with RBPJ, 1 pseudogene 1 		ENST00000524055 (CIR1P1-001) 154559308-154560440 processed_pseudogene
ENSG00000253886 (CTB-158E9.2)
 ENST00000520639 (CTB-158E9.2-001) 154493576-154494743 processed_pseudogene
ENSG00000254293 (CTB-158E9.1)
 ENST00000518984 (CTB-158E9.1-001) 154483917-154485929 lincRNA
ENST00000522134 (CTB-158E9.1-002) 154485273-154486150 lincRNA
ENSG00000272197 (Metazoa_SRP)
Metazoan signal recognition particle RNA 		ENST00000607433 (Metazoa_SRP.1-230) 154718383-154718689 misc_RNA
CIL_00023W_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000037335-ENSMUSG00000037331 CGP 10090 11:57828705-58062034
GeneTranscriptPositionBiotype
ENSMUSG00000037335 (Hand1)
heart and neural crest derivatives expressed transcript 1 		ENSMUST00000036917 (Hand1-001) 57828707-57832147 protein_coding
ENSMUST00000108845 (Hand1-002) 57831694-57832818 protein_coding
ENSMUST00000160392 (Hand1-201) 57828705-57832818 protein_coding
ENSMUSG00000083657 (Gm12245)
predicted gene 12245 		ENSMUST00000117266 (Gm12245-001) 57948729-57949085 processed_pseudogene
ENSMUSG00000084223 (Gm12244)
predicted gene 12244 		ENSMUST00000119500 (Gm12244-001) 57880896-57881186 processed_pseudogene
ENSMUSG00000086666 (Gm12249)
predicted gene 12249 		ENSMUST00000132323 (Gm12249-001) 57970244-57973134 lincRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00023W_0001ENSG00000113196ENST00000231121ENSG00000155506ENST00000336314ENST00000517616ENST00000518194ENST00000518297ENST00000518595ENST00000518677ENST00000518742ENST00000518892ENST00000519194ENST00000519931ENST00000521577ENST00000522272ENST00000523163ENST00000524187ENST00000524248ENSG00000221552ENST00000408625ENSG00000241187ENST00000463655ENSG00000253146ENST00000524055ENSG00000253886ENST00000520639ENSG00000254293ENST00000518984ENST00000522134ENSG00000272197ENST00000607433CIL_00023W_0002ENSMUSG00000037335ENSMUST00000036917ENSMUST00000108845ENSMUST00000160392ENSMUSG00000083657ENSMUST00000117266ENSMUSG00000084223ENSMUST00000119500ENSMUSG00000086666ENSMUST00000132323
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00023W_0001ENSG00000113196ENST00000231121ENSG00000155506ENST00000336314ENST00000518297ENSG00000221552ENST00000408625ENSG00000241187ENST00000463655ENSG00000253146ENST00000524055ENSG00000253886ENST00000520639ENSG00000254293ENST00000518984ENST00000522134ENSG00000272197ENST00000607433CIL_00023W_0002ENSMUSG00000037335ENSMUST00000036917ENSMUST00000108845ENSMUST00000160392ENSMUSG00000083657ENSMUST00000117266ENSMUSG00000084223ENSMUST00000119500ENSMUSG00000086666ENSMUST00000132323
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000113196 ENST00000231121 N/A N/A N/A N/A 1.637±0.00 15.070±14.06 5.183±4.53 N/A 0.728±0.00 0.036±0.00 N/A 0.034±0.00 1.347±0.39 0.440±0.30
ENSG00000155506 ENST00000336314 N/A N/A N/A 32.154±0.00 12.958±0.00 N/A N/A 13.777±0.00 4.815±0.00 3.647±0.00 0.974±0.00 16.921±16.87 7.419±0.00 3.348±0.00
ENST00000517616 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518194 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518297 N/A N/A N/A N/A N/A N/A 1.551±0.00 N/A 4.211±0.00 N/A N/A N/A N/A N/A
ENST00000518595 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518677 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518742 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000518892 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519194 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000519931 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000521577 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000522272 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000523163 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000524187 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000524248 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000221552 ENST00000408625 N/A N/A N/A N/A 0.498±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000241187 ENST00000463655 0.147±0.00 N/A 0.278±0.00 N/A 0.384±0.36 0.070±0.00 0.299±0.00 1.092±1.07 0.119±0.00 0.661±0.00 N/A 0.458±0.42 0.041±0.00 0.045±0.00
ENSG00000253146 ENST00000524055 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.151±0.00 N/A 0.008±0.00
ENSG00000253886 ENST00000520639 N/A N/A N/A N/A 0.041±0.03 N/A 0.041±0.03 0.019±0.00 0.113±0.00 N/A N/A N/A N/A 0.024±0.02
ENSG00000254293 ENST00000518984 N/A N/A N/A N/A N/A 0.063±0.00 0.022±0.00 N/A 0.157±0.00 N/A N/A N/A N/A N/A
ENST00000522134 N/A N/A N/A 0.116±0.00 N/A N/A 0.114±0.00 N/A N/A N/A N/A N/A N/A N/A
ENSG00000272197 ENST00000607433 N/A N/A N/A 0.062±0.00 N/A 0.053±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000037335 ENSMUST00000036917 N/A 8.659±3.54 0.269±0.04 0.010±0.00 N/A 4.673±0.62 N/A 0.193±0.05 0.245±0.16 N/A N/A N/A 116.263±49.00 0.170±0.14
ENSMUST00000108845 N/A N/A N/A 0.048±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000160392 N/A N/A 0.168±0.06 0.013±0.00 N/A N/A 0.015±0.00 0.092±0.05 0.051±0.00 0.023±0.01 N/A N/A 139.990±48.86 0.216±0.10
ENSMUSG00000083657 ENSMUST00000117266 N/A N/A 0.043±0.00 0.309±0.00 N/A N/A N/A N/A 0.534±0.61 N/A N/A 0.440±0.00 0.092±0.08 N/A
ENSMUSG00000084223 ENSMUST00000119500 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.138±0.00 N/A
ENSMUSG00000086666 ENSMUST00000132323 0.081±0.00 N/A N/A N/A N/A 0.147±0.00 N/A 0.082±0.03 0.013±0.00 N/A N/A 0.395±0.11 0.008±0.00 N/A

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