C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: PRP19/PSO4 pre-mRNA processing factor 19 homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000179297 Prpf19-002 ENSMUSG00000024735 10090 + 19:10895414-10909559 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000209 IEA protein polyubiquitination
GO:0000244 ISS spliceosomal tri-snRNP complex assembly
GO:0000245 IEA spliceosomal complex assembly
GO:0000398 ISS mRNA splicing, via spliceosome
GO:0000974 ISS Prp19 complex
GO:0001833 IMP inner cell mass cell proliferation
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005662 ISS DNA replication factor A complex
GO:0005681 ISA spliceosomal complex
GO:0005737 IDA cytoplasm
GO:0005811 IDA lipid particle
GO:0005856 IEA cytoskeleton
GO:0006303 ISS double-strand break repair via nonhomologous end joining
GO:0008610 IDA lipid biosynthetic process
GO:0010498 IMP proteasomal protein catabolic process
GO:0016020 IEA membrane
GO:0016607 ISS nuclear speck
GO:0034450 IEA ubiquitin-ubiquitin ligase activity
GO:0034613 ISS cellular protein localization
GO:0035861 ISS site of double-strand break
GO:0042802 IEA identical protein binding
GO:0045665 IDA negative regulation of neuron differentiation
GO:0045666 ISA positive regulation of neuron differentiation
GO:0048026 IMP positive regulation of mRNA splicing, via spliceosome
GO:0048711 IDA positive regulation of astrocyte differentiation
GO:0061630 ISS ubiquitin protein ligase activity
GO:0070534 ISS protein K63-linked ubiquitination
GO:0071013 IEA catalytic step 2 spliceosome
GO:0072422 ISS signal transduction involved in DNA damage checkpoint

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000227524 PRPF19-001 protein_coding Homo_sapiens 0 1749
ENST00000535326 PRPF19-007 protein_coding Homo_sapiens 0 363
ENST00000539960 PRPF19-004 retained_intron Homo_sapiens 0 719
ENST00000541371 PRPF19-003 protein_coding Homo_sapiens 0 610
ENST00000546152 PRPF19-002 protein_coding Homo_sapiens 0 435

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