C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SH3-domain binding protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000179943 Sh3bp2-201 ENSMUSG00000054520 10090 + 5:34549688-34563638 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastLiverLungMuscleOvaryPlacentaENSMUST00000179943
Transcript ID Adipose Bladder Brain Breast Liver Lung Muscle Ovary Placenta
ENSMUST00000179943 0.946±0.00 0.568±0.00 5.464±0.28 1.930±0.00 1.190±0.00 0.806±0.00 0.703±0.00 2.260±0.00 1.081±0.63

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003SI CIL_0003SI_0002 CGP 5:34496087-34563638
CIL_00074C CIL_00074C_0002 CGP 5:34525838-34632308

Gene Ontology

GO IDEvidence TypeGO Description
GO:0017124 IPI SH3 domain binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000356331 SH3BP2-007 protein_coding Homo_sapiens 0 1642
ENST00000435136 SH3BP2-002 protein_coding Homo_sapiens 0 1642
ENST00000442312 SH3BP2-201 protein_coding Homo_sapiens 0 1642
ENST00000452765 SH3BP2-001 protein_coding Homo_sapiens 0 1642
ENST00000503393 SH3BP2-202 protein_coding Homo_sapiens 0 1714
ENST00000510204 SH3BP2-008 retained_intron Homo_sapiens 0 791
ENST00000511747 SH3BP2-006 protein_coding Homo_sapiens 0 1714
ENST00000513069 SH3BP2-025 nonsense_mediated_decay Homo_sapiens 0 396
ENST00000515737 SH3BP2-003 nonsense_mediated_decay Homo_sapiens 0 1343
ENST00000515802 SH3BP2-009 retained_intron Homo_sapiens 0 1127

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