C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein F
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000180020 Hnrnpf-202 ENSMUSG00000042079 10090 + 6:117917294-117925621 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000180020
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000180020 17.670±2.64 6.381±1.74 33.392±4.42 20.423±3.36 13.706±5.65 14.005±5.07 8.901±0.97 16.536±4.12 29.773±25.99 24.264±2.56 3.292±1.12 9.548±0.94 22.414±13.96

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003727 ISS single-stranded RNA binding
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0043484 ISS regulation of RNA splicing

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000337970 HNRNPF-004 protein_coding Homo_sapiens 0 2619
ENST00000356053 HNRNPF-005 protein_coding Homo_sapiens 0 2621
ENST00000357065 HNRNPF-001 protein_coding Homo_sapiens 0 2621
ENST00000443950 HNRNPF-201 protein_coding Homo_sapiens 0 2623
ENST00000477108 HNRNPF-003 processed_transcript Homo_sapiens 0 503
ENST00000498176 HNRNPF-002 processed_transcript Homo_sapiens 0 418
ENST00000544000 HNRNPF-202 protein_coding Homo_sapiens 0 2619

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