C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rho GTPase activating protein 42
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000182617 Arhgap42-002 ENSMUSG00000050730 10090 - 9:9011238-9239101 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonKidneyLungOvaryPlacentaTestisENSMUST00000182617
Transcript ID Adipose Adrenal Breast Colon Kidney Lung Ovary Placenta Testis
ENSMUST00000182617 3.233±0.00 11.179±2.70 10.792±5.33 15.785±1.52 9.470±3.20 5.753±0.00 35.421±12.55 6.289±1.66 0.510±0.17

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003CN CIL_0003CN_0002 CGP 9:8994329-10904775

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000298815 ARHGAP42-201 protein_coding Homo_sapiens 0 1223
ENST00000416089 ARHGAP42P2-001 unprocessed_pseudogene Homo_sapiens 0 527
ENST00000443989 ARHGAP42P3-001 processed_pseudogene Homo_sapiens 0 571
ENST00000507474 ARHGAP42P1-001 unprocessed_pseudogene Homo_sapiens 0 558
ENST00000524649 ARHGAP42-009 retained_intron Homo_sapiens 0 279
ENST00000524892 ARHGAP42-003 protein_coding Homo_sapiens 0 1736
ENST00000529406 ARHGAP42-008 processed_transcript Homo_sapiens 0 198
ENST00000529535 ARHGAP42-001 nonsense_mediated_decay Homo_sapiens 0 496
ENST00000531183 ARHGAP42-006 protein_coding Homo_sapiens 0 693
ENST00000534060 ARHGAP42-007 processed_transcript Homo_sapiens 0 202
ENST00000548856 ARHGAP42P5-001 processed_pseudogene Homo_sapiens 0 566
ENST00000549782 ARHGAP42P4-001 processed_pseudogene Homo_sapiens 0 544

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