C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003CN_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000010654-ENSDARG00000021584 CGP 7955 18:40247219-40907607
GeneTranscriptPositionBiotype
ENSDARG00000010654 (ARHGAP42 (1 of 2))
Rho GTPase activating protein 42 		ENSDART00000019245 (ARHGAP42 (1 of 2)-201) 40247219-40463254 protein_coding
ENSDARG00000021584 (cntn5)
contactin 5 		ENSDART00000034225 (cntn5-001) 40580990-40724806 protein_coding
ENSDART00000098639 (cntn5-201) 40542326-40907607 protein_coding
ENSDART00000098641 (cntn5-202) 40542327-40786767 protein_coding
ENSDART00000124211 (cntn5-002) 40542328-40563479 protein_coding
CIL_0003CN_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000050730-ENSMUSG00000039488 CGP 10090 9:8994329-10904775
GeneTranscriptPositionBiotype
ENSMUSG00000039488 (Cntn5)
contactin 5 		ENSMUST00000074133 (Cntn5-201) 9661363-10419090 protein_coding
ENSMUST00000160216 (Cntn5-001) 9660969-10904775 protein_coding
ENSMUST00000160358 (Cntn5-003) 10640511-10904449 retained_intron
ENSMUST00000162484 (Cntn5-002) 9660891-10904726 protein_coding
ENSMUST00000179049 (Cntn5-202) 9661363-10419090 protein_coding
ENSMUSG00000050730 (Arhgap42)
Rho GTPase activating protein 42 		ENSMUST00000093893 (Arhgap42-001) 8994329-9239101 protein_coding
ENSMUST00000182617 (Arhgap42-002) 9011238-9239101 retained_intron
ENSMUST00000183182 (Arhgap42-003) 9147356-9239026 protein_coding
ENSMUSG00000085253 (Gm16833)
predicted gene, 16833 		ENSMUST00000150263 (Gm16833-201) 9260683-9260883 antisense
ENSMUST00000189204 (Gm16833-001) 9236288-9260883 antisense
ENSMUSG00000093959 (Gm24496)
predicted gene, 24496 		ENSMUST00000178287 (Gm24496-201) 10290478-10290587 miRNA
ENSMUSG00000096815 (Gm25086)
predicted gene, 25086 		ENSMUST00000179931 (Gm25086-201) 10295047-10295156 miRNA

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003CN_0001ENSDARG00000010654ENSDART00000019245ENSDARG00000021584ENSDART00000034225ENSDART00000098639ENSDART00000098641ENSDART00000124211CIL_0003CN_0002ENSMUSG00000039488ENSMUST00000074133ENSMUST00000160216ENSMUST00000160358ENSMUST00000162484ENSMUST00000179049ENSMUSG00000050730ENSMUST00000093893ENSMUST00000182617ENSMUST00000183182ENSMUSG00000085253ENSMUST00000150263ENSMUST00000189204ENSMUSG00000093959ENSMUST00000178287ENSMUSG00000096815ENSMUST00000179931
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003CN_0001ENSDARG00000010654ENSDART00000019245ENSDARG00000021584ENSDART00000034225ENSDART00000098639ENSDART00000098641ENSDART00000124211CIL_0003CN_0002ENSMUSG00000039488ENSMUST00000074133ENSMUST00000160216ENSMUST00000162484ENSMUST00000179049ENSMUSG00000050730ENSMUST00000093893ENSMUST00000182617ENSMUST00000183182ENSMUSG00000085253ENSMUST00000150263ENSMUST00000189204ENSMUSG00000093959ENSMUST00000178287ENSMUSG00000096815ENSMUST00000179931
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000010654 ENSDART00000019245 N/A N/A N/A 1.507±0.00 N/A N/A 0.443±0.19 N/A 0.257±0.00 N/A 0.550±0.00 N/A N/A N/A
ENSDARG00000021584 ENSDART00000034225 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.189±0.00 N/A N/A N/A
ENSDART00000098639 N/A N/A N/A 12.657±0.00 N/A N/A 0.814±0.55 0.130±0.00 N/A N/A 0.330±0.00 N/A N/A N/A
ENSDART00000098641 N/A N/A N/A 0.355±0.00 N/A N/A N/A N/A 0.017±0.00 N/A N/A N/A N/A N/A
ENSDART00000124211 N/A N/A N/A 3.468±0.70 N/A N/A 0.577±0.29 N/A N/A N/A 0.259±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000039488 ENSMUST00000074133 0.032±0.00 N/A N/A 0.476±0.00 N/A N/A 0.039±0.00 0.046±0.01 0.003±0.00 N/A N/A 0.073±0.03 0.016±0.00 N/A
ENSMUST00000160216 N/A N/A 0.012±0.00 0.584±0.00 N/A 0.016±0.00 N/A N/A N/A 0.010±0.00 N/A 0.070±0.00 0.009±0.00 N/A
ENSMUST00000160358 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162484 N/A N/A N/A N/A N/A N/A 0.155±0.03 N/A N/A N/A N/A 0.050±0.03 0.005±0.00 0.219±0.09
ENSMUST00000179049 0.017±0.00 0.060±0.01 0.007±0.00 N/A N/A 0.071±0.05 0.050±0.00 0.034±0.00 0.003±0.00 0.022±0.00 0.014±0.00 N/A 0.009±0.00 0.145±0.08
ENSMUSG00000050730 ENSMUST00000093893 3.516±1.79 3.207±0.56 3.031±1.03 0.895±0.32 4.382±1.02 5.323±1.33 0.769±0.06 6.536±0.80 5.126±3.64 5.213±1.74 0.455±0.23 11.233±4.00 2.824±1.75 0.217±0.13
ENSMUST00000182617 3.233±0.00 11.179±2.70 N/A N/A 10.792±5.33 15.785±1.52 N/A 9.470±3.20 N/A 5.753±0.00 N/A 35.421±12.55 6.289±1.66 0.510±0.17
ENSMUST00000183182 N/A 6.330±2.45 N/A N/A N/A N/A N/A N/A 8.120±2.31 11.115±0.00 N/A N/A N/A N/A
ENSMUSG00000085253 ENSMUST00000150263 N/A N/A N/A N/A N/A 3.320±0.00 N/A N/A N/A N/A N/A N/A 0.942±0.30 N/A
ENSMUST00000189204 N/A 0.206±0.00 N/A N/A N/A N/A 0.057±0.00 0.185±0.07 0.115±0.08 N/A N/A 0.218±0.14 0.082±0.05 N/A
ENSMUSG00000093959 ENSMUST00000178287 N/A N/A N/A 8.856±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000096815 ENSMUST00000179931 N/A N/A N/A 8.856±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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