C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene, 28047
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000184772 Gm28047-001 ENSMUSG00000052414 10090 - 15:102523843-102625067 nonsense_mediated_decay

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009B4 CIL_0009B4_0002 VISTA 15:102394217-102994945

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0043565 IEA sequence-specific DNA binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000077839 atf7b-201 protein_coding Danio_rerio 0 198
ENSDART00000104042 atf7b-202 protein_coding Danio_rerio 0 198
ENSDART00000136076 atf7b-001 protein_coding Danio_rerio 0 198
ENST00000267017 NPFF-001 protein_coding Homo_sapiens 1e-19 100
ENST00000420353 ATF7-001 protein_coding Homo_sapiens 0 1801
ENST00000448979 RP11-793H13.10-002 retained_intron Homo_sapiens 3e-19 100
ENST00000456903 ATF7-006 protein_coding Homo_sapiens 0 1836
ENST00000546661 ATF7-003 processed_transcript Homo_sapiens 0 411
ENST00000548118 ATF7-009 protein_coding Homo_sapiens 0 488
ENST00000548446 ATF7-007 protein_coding Homo_sapiens 0 1352
ENST00000550373 ATF7-008 processed_transcript Homo_sapiens 0 189
ENST00000551480 ATF7-005 protein_coding Homo_sapiens 0 544
ENST00000588078 ATF7-011 protein_coding Homo_sapiens 0 484
ENST00000588232 ATF7-010 protein_coding Homo_sapiens 0 547
ENST00000589726 ATF7-013 retained_intron Homo_sapiens 5e-22 108
ENST00000591397 ATF7-002 protein_coding Homo_sapiens 0 453
ENST00000591834 RP11-793H13.10-001 protein_coding Homo_sapiens 0 1879

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