C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type XI, alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000184978 Col11a1-003 ENSMUSG00000027966 10090 + 3:114165278-114219317 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000184978
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000184978 0.014±0.00 0.068±0.04 1.331±0.03 2.938±0.72 0.066±0.00 0.174±0.08 0.053±0.02 0.030±0.00 0.470±0.13 0.239±0.09 6.042±5.76 2.725±2.53 0.167±0.07

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001502 IMP cartilage condensation
GO:0002063 IMP chondrocyte development
GO:0003007 IGI heart morphogenesis
GO:0003674 ND molecular_function
GO:0005201 IEA extracellular matrix structural constituent
GO:0005581 IDA collagen trimer
GO:0006029 IMP proteoglycan metabolic process
GO:0030199 IGI collagen fibril organization
GO:0031012 IDA extracellular matrix
GO:0035989 IGI tendon development
GO:0042472 IMP inner ear morphogenesis
GO:0048704 IMP embryonic skeletal system morphogenesis
GO:0048705 IMP skeletal system morphogenesis
GO:0051216 IMP cartilage development
GO:0055010 IMP ventricular cardiac muscle tissue morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000353414 COL11A1-201 protein_coding Homo_sapiens 0 1868
ENST00000358392 COL11A1-202 protein_coding Homo_sapiens 0 1868
ENST00000370096 COL11A1-001 protein_coding Homo_sapiens 0 1868
ENST00000512756 COL11A1-008 protein_coding Homo_sapiens 0 1868

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