C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type XI, alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000370096 COL11A1-001 ENSG00000060718 9606 - 1:102876467-103108491 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastLiverOvaryPlacentaENST00000370096
Transcript ID Brain Breast Liver Ovary Placenta
ENST00000370096 0.383±0.10 0.924±0.52 0.081±0.00 0.683±0.38 1.377±0.39

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00072Y CIL_00072Y_0003 CGP 1:101802574-103108496
CIL_00072Z CIL_00072Z_0002 CGP 1:102876467-103555239

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001502 IEA cartilage condensation
GO:0001503 IEA ossification
GO:0002063 IEA chondrocyte development
GO:0003007 IEA heart morphogenesis
GO:0005201 NAS:IEA extracellular matrix structural constituent
GO:0005576 TAS extracellular region
GO:0005581 IEA collagen trimer
GO:0005592 NAS collagen type XI trimer
GO:0005788 TAS endoplasmic reticulum lumen
GO:0006029 IEA proteoglycan metabolic process
GO:0007601 IMP visual perception
GO:0007605 IMP sensory perception of sound
GO:0022617 TAS extracellular matrix disassembly
GO:0030198 NAS extracellular matrix organization
GO:0030199 NAS collagen fibril organization
GO:0030574 TAS collagen catabolic process
GO:0030674 NAS protein binding, bridging
GO:0031012 IEA extracellular matrix
GO:0035987 IEP endodermal cell differentiation
GO:0035989 IEA tendon development
GO:0042472 IEA inner ear morphogenesis
GO:0046872 IEA metal ion binding
GO:0048704 IEA embryonic skeletal system morphogenesis
GO:0048705 IEA skeletal system morphogenesis
GO:0050840 NAS extracellular matrix binding
GO:0050910 IMP detection of mechanical stimulus involved in sensory perception of sound
GO:0051216 IEA cartilage development
GO:0055010 IEA ventricular cardiac muscle tissue morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000092155 Col11a1-001 protein_coding Mus_musculus 0 7520
ENSMUST00000184978 Col11a1-003 nonsense_mediated_decay Mus_musculus 0 1868
ENSMUST00000123619 Col11a1-004 protein_coding Mus_musculus 0 946

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