C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: collagen, type XI, alpha 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000027966 Col11a1 10090 + 3:114030540-114220718 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000092155 Col11a1-001 114030540-114220718 protein_coding
  ENSMUST00000123619 Col11a1-004 114030540-114108324 protein_coding
  ENSMUST00000138680 Col11a1-002 114147129-114153971 retained_intron
  ENSMUST00000184978 Col11a1-003 114165278-114219317 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000092155ENSMUST00000123619ENSMUST00000184978
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000092155 0.377±0.07 0.102±0.07 2.195±0.13 2.106±0.61 0.148±0.04 0.105±0.06 0.035±0.03 0.043±0.02 0.712±0.36 0.070±0.04 0.235±0.08 3.305±2.24 2.787±3.24 0.090±0.02
ENSMUST00000123619 0.233±0.19 0.359±0.16 N/A 1.785±0.00 0.275±0.00 N/A N/A 0.059±0.03 N/A 0.052±0.00 N/A 0.876±0.00 0.150±0.00 0.108±0.03
ENSMUST00000184978 0.014±0.00 0.068±0.04 1.331±0.03 2.938±0.72 0.066±0.00 0.174±0.08 0.053±0.02 0.030±0.00 0.470±0.13 N/A 0.239±0.09 6.042±5.76 2.725±2.53 0.167±0.07

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology
GO IDEvidence TypeGO Description
GO:0001502 IMP cartilage condensation
GO:0001503 IEA ossification
GO:0002063 IMP chondrocyte development
GO:0003007 IGI heart morphogenesis
GO:0003674 ND molecular_function
GO:0005201 IEA extracellular matrix structural constituent
GO:0005578 IEA proteinaceous extracellular matrix
GO:0005581 IDA collagen trimer
GO:0006029 IMP proteoglycan metabolic process
GO:0007601 IEA visual perception
GO:0007605 IEA sensory perception of sound
GO:0030199 IGI collagen fibril organization
GO:0031012 IDA extracellular matrix
GO:0035987 IEA endodermal cell differentiation
GO:0035989 IGI tendon development
GO:0042472 IMP inner ear morphogenesis
GO:0046872 IEA metal ion binding
GO:0048704 IMP embryonic skeletal system morphogenesis
GO:0048705 IMP skeletal system morphogenesis
GO:0050910 IEA detection of mechanical stimulus involved in sensory perception of sound
GO:0051216 IMP cartilage development
GO:0055010 IMP ventricular cardiac muscle tissue morphogenesis

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000009014 col11a1b collagen, type XI, alpha 1b protein_coding Danio_rerio
ENSDARG00000026165 col11a1a collagen, type XI, alpha 1a protein_coding Danio_rerio
ENSG00000060718 COL11A1 collagen, type XI, alpha 1 protein_coding Homo_sapiens

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