C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: forkhead box J2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000162391 FOXJ2-001 ENSG00000065970 9606 + 12:8032703-8055503 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000162391
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000162391 8.874±0.00 2.278±0.00 1.136±0.00 2.161±0.56 4.456±2.37 4.383±3.52 4.302±3.25 2.241±1.62 1.856±0.64 4.346±3.38 6.414±3.44 6.445±4.45 6.094±0.49 6.587±2.73

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00001D CIL_00001D_0001 CGP 12:7919230-8055503
CIL_00001E CIL_00001E_0001 CGP 12:8032703-8066471

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000978 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001077 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0043565 IDA:IEA sequence-specific DNA binding
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000003238 Foxj2-001 protein_coding Mus_musculus 0 2719
ENSMUST00000177927 Foxj2-201 protein_coding Mus_musculus 0 2503

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