C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: trophinin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000173898 TRO-008 ENSG00000067445 9606 + X:54920811-54931431 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLungOvaryPlacentaTestisENST00000173898
Transcript ID Adrenal Brain Breast Colon Heart Kidney Lung Ovary Placenta Testis
ENST00000173898 0.694±0.00 2.040±0.00 0.115±0.00 0.073±0.02 0.136±0.00 0.963±0.00 0.200±0.00 1.814±0.00 0.647±0.38 0.512±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005886 TAS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0007156 TAS homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007566 TAS embryo implantation
GO:0030308 IEA negative regulation of cell growth

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000112709 Tro-201 protein_coding Mus_musculus 0 1550
ENSMUST00000087258 Tro-001 protein_coding Mus_musculus 0 1550
ENSMUST00000087253 Tro-002 protein_coding Mus_musculus 0 1389
ENSMUST00000151403 Tro-005 protein_coding Mus_musculus 0 1256
ENSMUST00000163450 Tro-003 nonsense_mediated_decay Mus_musculus 0 1127
ENSMUST00000163969 Tro-006 protein_coding Mus_musculus 0 1122
ENSMUST00000164071 Tro-004 protein_coding Mus_musculus 0 994
ENSMUST00000169450 Tro-008 retained_intron Mus_musculus 0 832
ENSMUST00000112697 Maged2-201 protein_coding Mus_musculus 0 532
ENSMUST00000026302 Maged2-011 protein_coding Mus_musculus 0 532
ENSMUST00000112700 Maged2-002 protein_coding Mus_musculus 0 532
ENSMUST00000112699 Maged2-001 protein_coding Mus_musculus 0 532
ENSMUST00000145342 Maged2-004 retained_intron Mus_musculus 0 346
ENSMUST00000165192 Tro-009 retained_intron Mus_musculus 0 281
ENSMUST00000148604 Tro-010 protein_coding Mus_musculus 0 279
ENSMUST00000171775 Tro-007 retained_intron Mus_musculus 0 207

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