C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAS (RAD and GEM)-like GTP-binding 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000201979 REM1-001 ENSG00000088320 9606 + 20:31475293-31484905 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000201979
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000201979 2.660±0.00 4.505±0.00 0.497±0.00 0.091±0.00 2.112±1.92 1.729±0.00 0.469±0.41 0.863±0.00 0.183±0.03 2.007±1.26 0.666±0.34 2.743±2.59 2.035±0.68 5.086±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008K5 CIL_0008K5_0001 VISTA 20:31303913-31904751
CIL_00089Z CIL_00089Z_0001 VISTA 20:31373735-31977079
CIL_0008N4 CIL_0008N4_0001 VISTA 20:31410024-32010895
CIL_0001A6 CIL_0001A6_0001 CGP 20:31440519-31476757
CIL_0001A7 CIL_0001A7_0001 CGP 20:31465506-31484905
CIL_0001A0 CIL_0001A0_0001 CGP 20:31475293-31577923

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005516 IEA calmodulin binding
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0006184 IEA GTP catabolic process
GO:0007165 IEA signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0015031 IEA protein transport
GO:0015093 IEA ferrous iron transmembrane transporter activity
GO:0015684 IEA ferrous iron transport
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000000369 Rem1-001 protein_coding Mus_musculus 0 920
ENSMUST00000139370 Rem1-003 retained_intron Mus_musculus 0 536

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