C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001A0_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000088320-ENSG00000101294 CGP 9606 20:31475293-31577923
GeneTranscriptPositionBiotype
ENSG00000088320 (REM1)
RAS (RAD and GEM)-like GTP-binding 1 		ENST00000201979 (REM1-001) 31475293-31484905 protein_coding
ENSG00000101294 (HM13)
histocompatibility (minor) 13 		ENST00000335574 (HM13-009) 31514428-31569567 protein_coding
ENST00000340852 (HM13-011) 31514428-31569567 protein_coding
ENST00000344042 (HM13-014) 31514521-31561730 protein_coding
ENST00000398174 (HM13-012) 31514428-31571606 protein_coding
ENST00000460225 (HM13-018) 31514621-31554828 processed_transcript
ENST00000460389 (HM13-002) 31548639-31569308 processed_transcript
ENST00000464173 (HM13-010) 31549062-31550471 processed_transcript
ENST00000464508 (HM13-022) 31547406-31549033 processed_transcript
ENST00000464661 (HM13-026) 31547465-31554825 processed_transcript
ENST00000466766 (HM13-015) 31514655-31538228 processed_transcript
ENST00000468559 (HM13-024) 31554747-31569567 processed_transcript
ENST00000469097 (HM13-006) 31545028-31569418 processed_transcript
ENST00000469126 (HM13-019) 31538183-31568211 processed_transcript
ENST00000472128 (HM13-008) 31549091-31567986 processed_transcript
ENST00000474466 (HM13-023) 31554588-31566267 processed_transcript
ENST00000479096 (HM13-025) 31547448-31549029 processed_transcript
ENST00000483310 (HM13-001) 31549027-31562671 processed_transcript
ENST00000487281 (HM13-007) 31566154-31569567 processed_transcript
ENST00000487964 (HM13-021) 31547382-31566275 processed_transcript
ENST00000492709 (HM13-020) 31538195-31569567 processed_transcript
ENST00000493364 (HM13-005) 31566057-31569252 processed_transcript
ENST00000494153 (HM13-004) 31548781-31569174 processed_transcript
ENST00000496438 (HM13-017) 31514502-31549217 processed_transcript
ENST00000498035 (HM13-013) 31514457-31541733 protein_coding
ENST00000619859 (HM13-027) 31559616-31577923 protein_coding
ENSG00000101898 (MCTS2P)
malignant T cell amplified sequence 2, pseudogene 		ENST00000394552 (MCTS2P-001) 31547504-31548049 processed_pseudogene
ENSG00000233354 (LINC00028)
long intergenic non-protein coding RNA 28 		ENST00000435497 (LINC00028-001) 31485778-31487574 lincRNA
ENSG00000235313 (HM13-IT1)
HM13 intronic transcript 1 (non-protein coding) 		ENST00000421894 (HM13-IT1-005) 31563166-31564076 sense_intronic
ENSG00000274364 (RP3-324O17.7)
 ENST00000614396 (RP3-324O17.7-001) 31535263-31535626 sense_intronic

Homo sapiens Ensembl (GRCh38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_0001A0_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000000359-ENSMUSG00000019188 CGP 10090 2:152626951-152708670
GeneTranscriptPositionBiotype
ENSMUSG00000000359 (Rem1)
rad and gem related GTP binding protein 1 		ENSMUST00000000369 (Rem1-001) 152626951-152635194 protein_coding
ENSMUST00000139370 (Rem1-003) 152632967-152635198 retained_intron
ENSMUST00000150913 (Rem1-002) 152626953-152628303 protein_coding
ENSMUSG00000019188 (H13)
histocompatibility 13 		ENSMUST00000079247 (H13-003) 152669534-152704128 protein_coding
ENSMUST00000089059 (H13-002) 152669488-152705036 protein_coding
ENSMUST00000109825 (H13-006) 152669488-152686701 protein_coding
ENSMUST00000125366 (H13-001) 152669461-152708670 protein_coding
ENSMUST00000129439 (H13-004) 152691839-152696241 retained_intron
ENSMUST00000148156 (H13-005) 152669486-152683441 retained_intron
ENSMUSG00000042814 (Mcts2)
malignant T cell amplified sequence 2 		ENSMUST00000062148 (Mcts2-001) 152687035-152687951 protein_coding
ENSMUSG00000087148 (1700030C14Rik)
RIKEN cDNA 1700030C14 gene 		ENSMUST00000139912 (1700030C14Rik-001) 152652883-152654330 antisense

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001A0_0001ENSG00000088320ENST00000201979ENSG00000101294ENST00000335574ENST00000340852ENST00000344042ENST00000398174ENST00000460225ENST00000460389ENST00000464173ENST00000464508ENST00000464661ENST00000466766ENST00000468559ENST00000469097ENST00000469126ENST00000472128ENST00000474466ENST00000479096ENST00000483310ENST00000487281ENST00000487964ENST00000492709ENST00000493364ENST00000494153ENST00000496438ENST00000498035ENST00000619859ENSG00000101898ENST00000394552ENSG00000233354ENST00000435497ENSG00000235313ENST00000421894ENSG00000274364ENST00000614396CIL_0001A0_0002ENSMUSG00000000359ENSMUST00000000369ENSMUST00000139370ENSMUST00000150913ENSMUSG00000019188ENSMUST00000079247ENSMUST00000089059ENSMUST00000109825ENSMUST00000125366ENSMUST00000129439ENSMUST00000148156ENSMUSG00000042814ENSMUST00000062148ENSMUSG00000087148ENSMUST00000139912
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001A0_0001ENSG00000088320ENST00000201979ENSG00000101294ENST00000335574ENST00000340852ENST00000344042ENST00000460389ENST00000464508ENST00000469097ENST00000469126ENST00000492709ENST00000493364ENST00000498035ENSG00000101898ENST00000394552ENSG00000233354ENST00000435497ENSG00000235313ENST00000421894ENSG00000274364ENST00000614396CIL_0001A0_0002ENSMUSG00000000359ENSMUST00000000369ENSMUST00000139370ENSMUST00000150913ENSMUSG00000019188ENSMUST00000079247ENSMUST00000089059ENSMUST00000109825ENSMUST00000125366ENSMUST00000148156ENSMUSG00000042814ENSMUST00000062148ENSMUSG00000087148ENSMUST00000139912
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000088320 ENST00000201979 2.660±0.00 4.505±0.00 0.497±0.00 0.091±0.00 2.112±1.92 1.729±0.00 0.469±0.41 0.863±0.00 0.183±0.03 2.007±1.26 0.666±0.34 2.743±2.59 2.035±0.68 5.086±0.00
ENSG00000101294 ENST00000335574 N/A N/A N/A 6.973±4.80 N/A N/A 10.007±0.00 N/A N/A N/A 36.980±0.00 N/A N/A N/A
ENST00000340852 37.959±0.00 51.212±0.00 2.161±0.00 5.545±0.00 21.227±16.16 18.242±15.18 3.235±2.76 38.599±29.43 53.026±50.82 21.476±17.99 N/A 63.491±31.73 111.540±24.58 25.929±8.67
ENST00000344042 N/A N/A 3.198±0.00 N/A N/A N/A 1.415±0.00 9.603±0.00 2.300±0.00 N/A N/A N/A N/A N/A
ENST00000398174 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000460225 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000460389 N/A N/A 1.483±0.00 N/A N/A N/A N/A N/A N/A 2.023±0.00 N/A N/A N/A N/A
ENST00000464173 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464508 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.314±0.00 N/A N/A N/A
ENST00000464661 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466766 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468559 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469097 25.115±0.00 50.393±0.00 N/A 12.370±0.00 30.923±0.00 27.321±0.00 8.345±0.00 68.860±0.00 69.493±0.00 19.947±0.00 N/A N/A N/A 30.282±0.00
ENST00000469126 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.792±0.00 N/A N/A N/A
ENST00000472128 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474466 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479096 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483310 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487281 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487964 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492709 N/A N/A N/A N/A N/A N/A 0.589±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000493364 N/A N/A N/A N/A 18.827±0.00 N/A N/A N/A N/A N/A N/A 173.034±0.00 86.916±0.00 45.414±0.00
ENST00000494153 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496438 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498035 N/A N/A 0.407±0.00 0.316±0.00 1.098±0.00 0.591±0.00 0.117±0.00 N/A 0.565±0.00 1.859±1.12 0.299±0.00 1.187±0.00 N/A N/A
ENST00000619859 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000101898 ENST00000394552 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.350±0.00 N/A N/A
ENSG00000233354 ENST00000435497 0.126±0.00 0.100±0.00 N/A N/A 0.035±0.00 N/A 0.031±0.00 0.034±0.00 N/A 0.519±0.00 N/A 0.095±0.01 0.290±0.08 0.061±0.00
ENSG00000235313 ENST00000421894 0.432±0.00 1.962±0.00 N/A 1.097±0.00 0.562±0.08 1.342±0.00 0.115±0.05 0.340±0.00 0.353±0.00 0.236±0.08 0.057±0.00 0.818±0.51 0.208±0.00 0.305±0.06
ENSG00000274364 ENST00000614396 0.219±0.00 0.187±0.00 N/A 0.038±0.00 0.173±0.00 N/A N/A 0.074±0.00 N/A 1.580±0.00 N/A 0.327±0.00 0.068±0.00 0.165±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000000359 ENSMUST00000000369 6.946±1.31 5.984±1.47 4.945±0.20 0.195±0.13 4.897±1.11 5.122±0.39 1.953±0.41 4.349±0.77 0.355±0.24 5.251±0.97 0.900±0.24 7.581±2.81 0.586±0.43 0.580±0.16
ENSMUST00000139370 N/A 1.396±0.55 N/A 0.076±0.00 1.569±0.31 0.956±0.04 N/A 1.181±0.01 0.081±0.00 1.765±0.12 0.225±0.02 3.263±1.06 0.339±0.00 0.101±0.00
ENSMUST00000150913 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.218±0.73 N/A
ENSMUSG00000019188 ENSMUST00000079247 N/A 70.563±0.63 N/A N/A N/A N/A N/A N/A N/A N/A N/A 48.521±0.00 N/A N/A
ENSMUST00000089059 31.440±10.97 44.295±9.29 20.018±0.35 33.049±12.43 40.499±6.42 30.838±5.54 11.852±3.36 36.094±6.40 23.534±8.03 32.229±4.73 11.991±0.94 47.816±10.20 56.716±20.25 32.254±10.70
ENSMUST00000109825 N/A 116.356±29.50 N/A N/A 41.009±0.00 47.622±10.04 N/A N/A N/A 15.940±0.00 N/A 91.806±39.51 N/A N/A
ENSMUST00000125366 5.950±0.99 10.608±0.73 4.800±0.02 6.717±3.28 5.542±1.14 5.893±0.91 1.513±0.25 3.888±1.41 3.100±0.86 5.380±0.82 1.704±0.35 12.366±1.08 4.148±1.46 2.104±0.00
ENSMUST00000129439 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148156 N/A N/A 4.235±1.13 10.945±6.14 N/A N/A 1.070±0.00 N/A 3.139±0.40 N/A N/A 7.728±0.33 N/A 1.054±0.00
ENSMUSG00000042814 ENSMUST00000062148 4.559±1.25 2.116±0.45 7.185±0.74 6.329±1.56 3.307±0.88 2.509±0.34 4.407±0.29 4.958±0.54 4.975±3.89 2.409±0.31 5.511±0.46 5.296±4.37 6.707±2.22 21.651±6.75
ENSMUSG00000087148 ENSMUST00000139912 N/A N/A N/A 0.225±0.09 N/A 0.083±0.00 0.085±0.00 N/A 0.045±0.00 N/A N/A 0.174±0.01 0.016±0.00 72.394±34.85

Loading