C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0001A0_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000088320-ENSG00000101294 CGP 9606 20:31475293-31577923
GeneTranscriptPositionBiotype
ENSG00000088320 (REM1)
RAS (RAD and GEM)-like GTP-binding 1 		ENST00000201979 (REM1-001) 31475293-31484905 protein_coding
ENSG00000101294 (HM13)
histocompatibility (minor) 13 		ENST00000335574 (HM13-009) 31514428-31569567 protein_coding
ENST00000340852 (HM13-011) 31514428-31569567 protein_coding
ENST00000344042 (HM13-014) 31514521-31561730 protein_coding
ENST00000398174 (HM13-012) 31514428-31571606 protein_coding
ENST00000460225 (HM13-018) 31514621-31554828 processed_transcript
ENST00000460389 (HM13-002) 31548639-31569308 processed_transcript
ENST00000464173 (HM13-010) 31549062-31550471 processed_transcript
ENST00000464508 (HM13-022) 31547406-31549033 processed_transcript
ENST00000464661 (HM13-026) 31547465-31554825 processed_transcript
ENST00000466766 (HM13-015) 31514655-31538228 processed_transcript
ENST00000468559 (HM13-024) 31554747-31569567 processed_transcript
ENST00000469097 (HM13-006) 31545028-31569418 processed_transcript
ENST00000469126 (HM13-019) 31538183-31568211 processed_transcript
ENST00000472128 (HM13-008) 31549091-31567986 processed_transcript
ENST00000474466 (HM13-023) 31554588-31566267 processed_transcript
ENST00000479096 (HM13-025) 31547448-31549029 processed_transcript
ENST00000483310 (HM13-001) 31549027-31562671 processed_transcript
ENST00000487281 (HM13-007) 31566154-31569567 processed_transcript
ENST00000487964 (HM13-021) 31547382-31566275 processed_transcript
ENST00000492709 (HM13-020) 31538195-31569567 processed_transcript
ENST00000493364 (HM13-005) 31566057-31569252 processed_transcript
ENST00000494153 (HM13-004) 31548781-31569174 processed_transcript
ENST00000496438 (HM13-017) 31514502-31549217 processed_transcript
ENST00000498035 (HM13-013) 31514457-31541733 protein_coding
ENST00000619859 (HM13-027) 31559616-31577923 protein_coding
ENSG00000101898 (MCTS2P)
malignant T cell amplified sequence 2, pseudogene 		ENST00000394552 (MCTS2P-001) 31547504-31548049 processed_pseudogene
ENSG00000233354 (LINC00028)
long intergenic non-protein coding RNA 28 		ENST00000435497 (LINC00028-001) 31485778-31487574 lincRNA
ENSG00000235313 (HM13-IT1)
HM13 intronic transcript 1 (non-protein coding) 		ENST00000421894 (HM13-IT1-005) 31563166-31564076 sense_intronic
ENSG00000274364 (RP3-324O17.7)
 ENST00000614396 (RP3-324O17.7-001) 31535263-31535626 sense_intronic
CIL_0001A0_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000000359-ENSMUSG00000019188 CGP 10090 2:152626951-152708670
GeneTranscriptPositionBiotype
ENSMUSG00000000359 (Rem1)
rad and gem related GTP binding protein 1 		ENSMUST00000000369 (Rem1-001) 152626951-152635194 protein_coding
ENSMUST00000139370 (Rem1-003) 152632967-152635198 retained_intron
ENSMUST00000150913 (Rem1-002) 152626953-152628303 protein_coding
ENSMUSG00000019188 (H13)
histocompatibility 13 		ENSMUST00000079247 (H13-003) 152669534-152704128 protein_coding
ENSMUST00000089059 (H13-002) 152669488-152705036 protein_coding
ENSMUST00000109825 (H13-006) 152669488-152686701 protein_coding
ENSMUST00000125366 (H13-001) 152669461-152708670 protein_coding
ENSMUST00000129439 (H13-004) 152691839-152696241 retained_intron
ENSMUST00000148156 (H13-005) 152669486-152683441 retained_intron
ENSMUSG00000042814 (Mcts2)
malignant T cell amplified sequence 2 		ENSMUST00000062148 (Mcts2-001) 152687035-152687951 protein_coding
ENSMUSG00000087148 (1700030C14Rik)
RIKEN cDNA 1700030C14 gene 		ENSMUST00000139912 (1700030C14Rik-001) 152652883-152654330 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001A0_0001ENSG00000088320ENST00000201979ENSG00000101294ENST00000335574ENST00000340852ENST00000344042ENST00000398174ENST00000460225ENST00000460389ENST00000464173ENST00000464508ENST00000464661ENST00000466766ENST00000468559ENST00000469097ENST00000469126ENST00000472128ENST00000474466ENST00000479096ENST00000483310ENST00000487281ENST00000487964ENST00000492709ENST00000493364ENST00000494153ENST00000496438ENST00000498035ENST00000619859ENSG00000101898ENST00000394552ENSG00000233354ENST00000435497ENSG00000235313ENST00000421894ENSG00000274364ENST00000614396CIL_0001A0_0002ENSMUSG00000000359ENSMUST00000000369ENSMUST00000139370ENSMUST00000150913ENSMUSG00000019188ENSMUST00000079247ENSMUST00000089059ENSMUST00000109825ENSMUST00000125366ENSMUST00000129439ENSMUST00000148156ENSMUSG00000042814ENSMUST00000062148ENSMUSG00000087148ENSMUST00000139912
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0001A0_0001ENSG00000088320ENST00000201979ENSG00000101294ENST00000335574ENST00000340852ENST00000344042ENST00000460389ENST00000464508ENST00000469097ENST00000469126ENST00000492709ENST00000493364ENST00000498035ENSG00000101898ENST00000394552ENSG00000233354ENST00000435497ENSG00000235313ENST00000421894ENSG00000274364ENST00000614396CIL_0001A0_0002ENSMUSG00000000359ENSMUST00000000369ENSMUST00000139370ENSMUST00000150913ENSMUSG00000019188ENSMUST00000079247ENSMUST00000089059ENSMUST00000109825ENSMUST00000125366ENSMUST00000148156ENSMUSG00000042814ENSMUST00000062148ENSMUSG00000087148ENSMUST00000139912
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000088320 ENST00000201979 2.660±0.00 4.505±0.00 0.497±0.00 0.091±0.00 2.112±1.92 1.729±0.00 0.469±0.41 0.863±0.00 0.183±0.03 2.007±1.26 0.666±0.34 2.743±2.59 2.035±0.68 5.086±0.00
ENSG00000101294 ENST00000335574 N/A N/A N/A 6.973±4.80 N/A N/A 10.007±0.00 N/A N/A N/A 36.980±0.00 N/A N/A N/A
ENST00000340852 37.959±0.00 51.212±0.00 2.161±0.00 5.545±0.00 21.227±16.16 18.242±15.18 3.235±2.76 38.599±29.43 53.026±50.82 21.476±17.99 N/A 63.491±31.73 111.540±24.58 25.929±8.67
ENST00000344042 N/A N/A 3.198±0.00 N/A N/A N/A 1.415±0.00 9.603±0.00 2.300±0.00 N/A N/A N/A N/A N/A
ENST00000398174 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000460225 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000460389 N/A N/A 1.483±0.00 N/A N/A N/A N/A N/A N/A 2.023±0.00 N/A N/A N/A N/A
ENST00000464173 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000464508 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.314±0.00 N/A N/A N/A
ENST00000464661 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466766 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468559 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000469097 25.115±0.00 50.393±0.00 N/A 12.370±0.00 30.923±0.00 27.321±0.00 8.345±0.00 68.860±0.00 69.493±0.00 19.947±0.00 N/A N/A N/A 30.282±0.00
ENST00000469126 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.792±0.00 N/A N/A N/A
ENST00000472128 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474466 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000479096 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483310 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487281 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000487964 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000492709 N/A N/A N/A N/A N/A N/A 0.589±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000493364 N/A N/A N/A N/A 18.827±0.00 N/A N/A N/A N/A N/A N/A 173.034±0.00 86.916±0.00 45.414±0.00
ENST00000494153 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000496438 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498035 N/A N/A 0.407±0.00 0.316±0.00 1.098±0.00 0.591±0.00 0.117±0.00 N/A 0.565±0.00 1.859±1.12 0.299±0.00 1.187±0.00 N/A N/A
ENST00000619859 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000101898 ENST00000394552 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.350±0.00 N/A N/A
ENSG00000233354 ENST00000435497 0.126±0.00 0.100±0.00 N/A N/A 0.035±0.00 N/A 0.031±0.00 0.034±0.00 N/A 0.519±0.00 N/A 0.095±0.01 0.290±0.08 0.061±0.00
ENSG00000235313 ENST00000421894 0.432±0.00 1.962±0.00 N/A 1.097±0.00 0.562±0.08 1.342±0.00 0.115±0.05 0.340±0.00 0.353±0.00 0.236±0.08 0.057±0.00 0.818±0.51 0.208±0.00 0.305±0.06
ENSG00000274364 ENST00000614396 0.219±0.00 0.187±0.00 N/A 0.038±0.00 0.173±0.00 N/A N/A 0.074±0.00 N/A 1.580±0.00 N/A 0.327±0.00 0.068±0.00 0.165±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000000359 ENSMUST00000000369 6.946±1.31 5.984±1.47 4.945±0.20 0.195±0.13 4.897±1.11 5.122±0.39 1.953±0.41 4.349±0.77 0.355±0.24 5.251±0.97 0.900±0.24 7.581±2.81 0.586±0.43 0.580±0.16
ENSMUST00000139370 N/A 1.396±0.55 N/A 0.076±0.00 1.569±0.31 0.956±0.04 N/A 1.181±0.01 0.081±0.00 1.765±0.12 0.225±0.02 3.263±1.06 0.339±0.00 0.101±0.00
ENSMUST00000150913 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.218±0.73 N/A
ENSMUSG00000019188 ENSMUST00000079247 N/A 70.563±0.63 N/A N/A N/A N/A N/A N/A N/A N/A N/A 48.521±0.00 N/A N/A
ENSMUST00000089059 31.440±10.97 44.295±9.29 20.018±0.35 33.049±12.43 40.499±6.42 30.838±5.54 11.852±3.36 36.094±6.40 23.534±8.03 32.229±4.73 11.991±0.94 47.816±10.20 56.716±20.25 32.254±10.70
ENSMUST00000109825 N/A 116.356±29.50 N/A N/A 41.009±0.00 47.622±10.04 N/A N/A N/A 15.940±0.00 N/A 91.806±39.51 N/A N/A
ENSMUST00000125366 5.950±0.99 10.608±0.73 4.800±0.02 6.717±3.28 5.542±1.14 5.893±0.91 1.513±0.25 3.888±1.41 3.100±0.86 5.380±0.82 1.704±0.35 12.366±1.08 4.148±1.46 2.104±0.00
ENSMUST00000129439 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148156 N/A N/A 4.235±1.13 10.945±6.14 N/A N/A 1.070±0.00 N/A 3.139±0.40 N/A N/A 7.728±0.33 N/A 1.054±0.00
ENSMUSG00000042814 ENSMUST00000062148 4.559±1.25 2.116±0.45 7.185±0.74 6.329±1.56 3.307±0.88 2.509±0.34 4.407±0.29 4.958±0.54 4.975±3.89 2.409±0.31 5.511±0.46 5.296±4.37 6.707±2.22 21.651±6.75
ENSMUSG00000087148 ENSMUST00000139912 N/A N/A N/A 0.225±0.09 N/A 0.083±0.00 0.085±0.00 N/A 0.045±0.00 N/A N/A 0.174±0.01 0.016±0.00 72.394±34.85

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