C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ESF1, nucleolar pre-rRNA processing protein, homolog (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000202816 ESF1-001 ENSG00000089048 9606 - 20:13714322-13784886 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000202816
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000202816 2.222±0.00 3.908±0.00 3.806±0.00 3.296±0.60 2.478±1.58 1.728±1.03 3.858±0.00 1.941±0.03 1.380±0.00 2.064±1.79 3.637±0.01 1.970±1.67 8.421±2.38

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002DC CIL_0002DC_0001 CGP 20:13389392-13784886
CIL_00000K CIL_00000K_0002 CGP 20:13714322-13821582

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005615 IDA extracellular space
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000046030 Esf1-001 protein_coding Mus_musculus 0 2575
ENSMUST00000137005 Esf1-003 retained_intron Mus_musculus 0 612
ENSMUST00000153769 Esf1-005 retained_intron Mus_musculus 0 339
ENSMUST00000141086 Esf1-002 retained_intron Mus_musculus 0 292

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