C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cell division cycle 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000209728 CDC6-001 ENSG00000094804 9606 + 17:40287633-40304657 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000209728
Transcript ID Adipose Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000209728 0.104±0.00 0.412±0.31 0.131±0.00 0.280±0.00 0.101±0.08 0.306±0.00 0.081±0.06 0.126±0.00 0.102±0.00 4.543±5.90 2.671±1.82 2.994±0.84

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098Y CIL_00098Y_0001 VISTA 17:39768583-40372873
CIL_0002GK CIL_0002GK_0001 CGP 17:40219304-40304657
CIL_0002GL CIL_0002GL_0001 CGP 17:40287633-40357643

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000076 TAS DNA replication checkpoint
GO:0000079 TAS regulation of cyclin-dependent protein serine/threonine kinase activity
GO:0000082 TAS G1/S transition of mitotic cell cycle
GO:0000083 TAS regulation of transcription involved in G1/S transition of mitotic cell cycle
GO:0000166 TAS nucleotide binding
GO:0000278 TAS mitotic cell cycle
GO:0000922 IDA spindle pole
GO:0003682 IEA chromatin binding
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005737 IDA cytoplasm
GO:0005794 IDA Golgi apparatus
GO:0005819 IEA spindle
GO:0005829 TAS cytosol
GO:0006260 TAS DNA replication
GO:0007067 IEA mitotic nuclear division
GO:0007089 TAS traversing start control point of mitotic cell cycle
GO:0008156 TAS negative regulation of DNA replication
GO:0008285 TAS negative regulation of cell proliferation
GO:0019900 IPI kinase binding
GO:0030071 IMP regulation of mitotic metaphase/anaphase transition
GO:0032467 IMP positive regulation of cytokinesis
GO:0051233 IDA spindle midzone
GO:0051984 IDA positive regulation of chromosome segregation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000093937 Cdc6-002 protein_coding Mus_musculus 0 1443
ENSMUST00000092706 Cdc6-001 protein_coding Mus_musculus 0 1443
ENSMUST00000121232 Gm9430-001 processed_pseudogene Mus_musculus 0 1197
ENSMUST00000133779 Cdc6-003 nonsense_mediated_decay Mus_musculus 0 773

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