C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: charged multivesicular body protein 4B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000217402 CHMP4B-001 ENSG00000101421 9606 + 20:33811304-33854366 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000217402
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000217402 69.142±0.00 60.068±0.00 1.980±0.00 44.157±37.32 28.524±19.68 56.432±47.61 21.856±20.81 27.987±24.93 13.698±7.50 50.546±49.05 31.737±26.73 161.650±171.30 73.675±16.72 80.339±16.67

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001NU CIL_0001NU_0001 CGP 20:33731657-33854366

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000815 IDA ESCRT III complex
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0006620 IMP posttranslational protein targeting to membrane
GO:0007034 IEA vacuolar transport
GO:0009898 IDA cytoplasmic side of plasma membrane
GO:0016032 TAS viral process
GO:0016197 TAS endosomal transport
GO:0019058 TAS viral life cycle
GO:0030496 IDA midbody
GO:0042802 IDA identical protein binding
GO:0042803 IPI protein homodimerization activity
GO:0050792 IMP regulation of viral process
GO:0051260 IDA protein homooligomerization
GO:0061024 TAS membrane organization
GO:0070062 IDA extracellular vesicular exosome
GO:1901215 IMP negative regulation of neuron death
GO:1902188 IMP positive regulation of viral release from host cell
GO:1902902 IMP negative regulation of autophagic vacuole assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000044277 Chmp4b-001 protein_coding Mus_musculus 0 1760
ENSMUST00000151668 Chmp4b-002 processed_transcript Mus_musculus 0 1275
ENSMUST00000136788 Chmp4b-003 retained_intron Mus_musculus 0 651
ENSMUST00000084885 Ubp1-202 protein_coding Mus_musculus 0.00007 55
ENSMUST00000009885 Ubp1-201 protein_coding Mus_musculus 0.00007 55

Loading