C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: upstream binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000084885 Ubp1-202 ENSMUSG00000009741 10090 + 9:113930934-113977199 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000084885
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000084885 15.568±2.03 12.523±4.29 8.657±0.32 17.894±14.68 12.235±1.88 11.256±3.32 10.251±0.94 11.647±0.84 7.766±3.02 16.458±4.04 3.794±0.88 14.806±8.71 7.864±3.90 1.668±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003DD CIL_0003DD_0002 CGP 9:113812586-113977199

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001525 IMP angiogenesis
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000084848 tfcp2-201 protein_coding Danio_rerio 0 460
ENSDART00000138416 tfcp2-001 protein_coding Danio_rerio 0 460
ENSDART00000040480 tfcp2l1-002 nonsense_mediated_decay Danio_rerio 0 211
ENSDART00000146663 tfcp2l1-001 protein_coding Danio_rerio 0 211
ENSDART00000111960 tfcp2l1-201 protein_coding Danio_rerio 0 211
ENST00000217402 CHMP4B-001 protein_coding Homo_sapiens 0.00007 55
ENST00000283628 UBP1-003 protein_coding Homo_sapiens 0 2531
ENST00000283629 UBP1-001 protein_coding Homo_sapiens 0 2604
ENST00000411650 UBP1-008 nonsense_mediated_decay Homo_sapiens 0 510
ENST00000447368 UBP1-002 protein_coding Homo_sapiens 0 1219
ENST00000456378 UBP1-007 protein_coding Homo_sapiens 0 555
ENST00000464787 UBP1-011 retained_intron Homo_sapiens 0 396
ENST00000466441 UBP1-005 retained_intron Homo_sapiens 0 682
ENST00000467613 UBP1-015 processed_transcript Homo_sapiens 0 893
ENST00000481761 UBP1-009 processed_transcript Homo_sapiens 0 604
ENST00000486388 UBP1-010 processed_transcript Homo_sapiens 0 571
ENST00000490112 UBP1-014 retained_intron Homo_sapiens 0 279
ENST00000492136 UBP1-004 retained_intron Homo_sapiens 0 316

Loading