C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 32 (GABA vesicular transporter), member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000217420 SLC32A1-001 ENSG00000101438 9606 + 20:38724462-38729372 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonOvaryTestisENST00000217420
Transcript ID Brain Colon Ovary Testis
ENST00000217420 5.220±3.21 0.025±0.00 0.017±0.00 0.614±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00081Y CIL_00081Y_0001 VISTA 20:38219747-38821106
CIL_0004NT CIL_0004NT_0001 CGP 20:38601934-38729372
CIL_0004NU CIL_0004NU_0001 CGP 20:38724462-38772520

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005886 TAS plasma membrane
GO:0006811 TAS ion transport
GO:0007268 TAS synaptic transmission
GO:0007269 TAS neurotransmitter secretion
GO:0007568 IEA aging
GO:0008021 IEA synaptic vesicle
GO:0015187 IEA glycine transmembrane transporter activity
GO:0015495 IEA gamma-aminobutyric acid:proton symporter activity
GO:0015812 IEA gamma-aminobutyric acid transport
GO:0015816 IEA glycine transport
GO:0016021 IEA integral component of membrane
GO:0030425 IDA dendrite
GO:0030672 TAS synaptic vesicle membrane
GO:0043005 IDA neuron projection
GO:0043229 IEA intracellular organelle
GO:0044292 IEA dendrite terminus
GO:0044306 IDA neuron projection terminus
GO:0044316 IEA cone cell pedicle
GO:0045202 IEA synapse
GO:0051286 IEA cell tip
GO:0055085 TAS transmembrane transport
GO:0060077 IEA inhibitory synapse
GO:0061202 TAS clathrin-sculpted gamma-aminobutyric acid transport vesicle membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000045738 Slc32a1-001 protein_coding Mus_musculus 0 2641
ENSDART00000083453 slc32a1-201 protein_coding Danio_rerio 0 1260

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