C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0004NT_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000124143-ENSG00000101438 CGP 9606 20:38601934-38729372
GeneTranscriptPositionBiotype
ENSG00000101438 (SLC32A1)
solute carrier family 32 (GABA vesicular transporter), member 1 		ENST00000217420 (SLC32A1-001) 38724462-38729372 protein_coding
ENSG00000124143 (ARHGAP40)
Rho GTPase activating protein 40 		ENST00000243967 (ARHGAP40-001) 38626996-38650508 protein_coding
ENST00000373345 (ARHGAP40-201) 38601934-38650652 protein_coding
ENST00000373346 (ARHGAP40-003) 38643907-38650379 protein_coding
ENST00000414158 (ARHGAP40-004) 38647063-38651035 protein_coding
ENSG00000213959 (RP5-1100H13.3)
 ENST00000397037 (RP5-1100H13.3-001) 38614913-38615476 processed_pseudogene
ENSG00000277965 (Metazoa_SRP)
Metazoan signal recognition particle RNA 		ENST00000621099 (Metazoa_SRP.1-457) 38711821-38712103 misc_RNA
CIL_0004NT_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000074625-ENSMUSG00000037771 CGP 10090 2:158512796-158615748
GeneTranscriptPositionBiotype
ENSMUSG00000037771 (Slc32a1)
solute carrier family 32 (GABA vesicular transporter), member 1 		ENSMUST00000045738 (Slc32a1-001) 158610767-158615748 protein_coding
ENSMUSG00000074625 (Arhgap40)
Rho GTPase activating protein 40 		ENSMUST00000099133 (Arhgap40-001) 158512796-158550762 protein_coding
ENSMUST00000135838 (Arhgap40-002) 158541737-158550762 retained_intron
ENSMUST00000165398 (Arhgap40-201) 158512796-158550628 protein_coding
ENSMUSG00000087563 (Gm14205)
predicted gene 14205 		ENSMUST00000138427 (Gm14205-001) 158610910-158611820 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004NT_0001ENSG00000101438ENST00000217420ENSG00000124143ENST00000243967ENST00000373345ENST00000373346ENST00000414158ENSG00000213959ENST00000397037ENSG00000277965ENST00000621099CIL_0004NT_0002ENSMUSG00000037771ENSMUST00000045738ENSMUSG00000074625ENSMUST00000099133ENSMUST00000135838ENSMUST00000165398ENSMUSG00000087563ENSMUST00000138427
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004NT_0001ENSG00000101438ENST00000217420ENSG00000124143ENST00000243967ENST00000373345ENST00000373346ENST00000414158ENSG00000213959ENST00000397037ENSG00000277965ENST00000621099CIL_0004NT_0002ENSMUSG00000037771ENSMUST00000045738ENSMUSG00000074625ENSMUST00000099133ENSMUST00000135838ENSMUST00000165398ENSMUSG00000087563ENSMUST00000138427
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000101438 ENST00000217420 N/A N/A N/A 5.220±3.21 N/A 0.025±0.00 N/A N/A N/A N/A N/A 0.017±0.00 N/A 0.614±0.01
ENSG00000124143 ENST00000243967 N/A N/A N/A 0.045±0.00 0.382±0.00 N/A N/A 0.172±0.00 N/A 0.171±0.00 N/A N/A 0.026±0.00 0.407±0.00
ENST00000373345 N/A N/A N/A 0.041±0.00 N/A N/A N/A N/A 0.245±0.00 N/A N/A 0.017±0.00 0.061±0.00 N/A
ENST00000373346 N/A N/A N/A N/A 0.430±0.00 N/A 0.258±0.00 N/A N/A 0.136±0.00 N/A N/A 0.090±0.00 0.350±0.00
ENST00000414158 N/A N/A N/A 0.047±0.00 0.324±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.437±0.00
ENSG00000213959 ENST00000397037 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.290±0.00 N/A 0.081±0.00
ENSG00000277965 ENST00000621099 0.121±0.00 1.011±0.00 N/A 0.424±0.00 0.266±0.00 0.121±0.00 0.301±0.00 1.113±0.00 N/A 0.061±0.00 0.056±0.00 0.242±0.10 N/A 0.414±0.01
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000037771 ENSMUST00000045738 N/A N/A 0.003±0.00 25.871±2.56 0.038±0.03 N/A 0.013±0.00 N/A 0.029±0.01 0.008±0.00 N/A 0.018±0.00 0.056±0.03 0.039±0.02
ENSMUSG00000074625 ENSMUST00000099133 0.373±0.00 N/A 2.959±1.10 0.032±0.00 N/A N/A N/A 0.065±0.03 0.018±0.01 0.284±0.00 0.094±0.00 0.361±0.25 0.004±0.00 N/A
ENSMUST00000135838 0.501±0.36 N/A 10.464±0.81 0.171±0.00 4.177±0.32 0.067±0.00 N/A 0.091±0.05 0.040±0.02 0.762±0.00 0.032±0.00 0.875±0.37 0.091±0.08 N/A
ENSMUST00000165398 0.043±0.00 0.022±0.00 3.928±0.00 N/A 1.417±0.20 0.032±0.01 0.026±0.01 0.051±0.01 0.009±0.00 0.629±0.36 0.016±0.00 0.372±0.18 0.171±0.11 0.241±0.01
ENSMUSG00000087563 ENSMUST00000138427 N/A N/A N/A 38.263±9.82 0.078±0.02 N/A N/A N/A 0.137±0.12 N/A N/A N/A N/A 0.052±0.00

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