C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary

CIL_0004NU_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000101438-ENSG00000101442 CGP 9606 20:38724462-38772520
GeneTranscriptPositionBiotype
ENSG00000101438 (SLC32A1)
solute carrier family 32 (GABA vesicular transporter), member 1
ENST00000217420 (SLC32A1-001) 38724462-38729372 protein_coding
ENSG00000101442 (ACTR5)
ARP5 actin-related protein 5 homolog (yeast)
ENST00000243903 (ACTR5-001) 38748442-38772520 protein_coding
ENSG00000199691 (RN7SKP173)
RNA, 7SK small nuclear pseudogene 173
ENST00000362821 (RN7SKP173-201) 38761528-38761842 misc_RNA
CIL_0004NU_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000037771-ENSMUSG00000037761 CGP 10090 2:158610767-158639211
GeneTranscriptPositionBiotype
ENSMUSG00000037761 (Actr5)
ARP5 actin-related protein 5
ENSMUST00000045644 (Actr5-001) 158624888-158639211 protein_coding
ENSMUST00000125390 (Actr5-005) 158624888-158629157 retained_intron
ENSMUST00000142531 (Actr5-004) 158624888-158639198 retained_intron
ENSMUST00000183586 (Actr5-003) 158631629-158636697 processed_transcript
ENSMUST00000183731 (Actr5-002) 158624888-158639198 nonsense_mediated_decay
ENSMUSG00000037771 (Slc32a1)
solute carrier family 32 (GABA vesicular transporter), member 1
ENSMUST00000045738 (Slc32a1-001) 158610767-158615748 protein_coding
ENSMUSG00000087563 (Gm14205)
predicted gene 14205
ENSMUST00000138427 (Gm14205-001) 158610910-158611820 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004NU_0001ENSG00000101438ENST00000217420ENSG00000101442ENST00000243903ENSG00000199691ENST00000362821CIL_0004NU_0002ENSMUSG00000037761ENSMUST00000045644ENSMUST00000125390ENSMUST00000142531ENSMUST00000183586ENSMUST00000183731ENSMUSG00000037771ENSMUST00000045738ENSMUSG00000087563ENSMUST00000138427
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0004NU_0001ENSG00000101438ENST00000217420ENSG00000101442ENST00000243903ENSG00000199691ENST00000362821CIL_0004NU_0002ENSMUSG00000037761ENSMUST00000045644ENSMUST00000142531ENSMUST00000183586ENSMUST00000183731ENSMUSG00000037771ENSMUST00000045738ENSMUSG00000087563ENSMUST00000138427
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000101438 ENST00000217420 N/A N/A N/A 5.220±3.21 N/A 0.025±0.00 N/A N/A N/A N/A N/A 0.017±0.00 N/A 0.614±0.01
ENSG00000101442 ENST00000243903 1.736±0.00 3.356±0.00 0.518±0.00 1.219±0.12 1.203±0.00 0.678±0.45 0.887±0.00 1.485±1.36 0.890±0.68 0.922±0.00 1.360±1.04 3.431±0.78 1.837±0.27 6.652±0.00
ENSG00000199691 ENST00000362821 N/A 0.797±0.00 N/A 0.130±0.00 0.190±0.00 1.039±0.00 N/A 0.312±0.00 N/A 0.119±0.00 N/A 2.603±3.03 N/A 0.222±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000037761 ENSMUST00000045644 1.261±0.29 1.232±0.00 1.303±0.12 2.639±0.23 1.498±0.54 1.454±0.39 0.603±0.29 1.490±0.27 1.395±0.77 1.762±0.79 0.698±0.30 2.158±0.81 2.194±0.56 2.058±0.31
ENSMUST00000125390 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142531 1.086±0.40 2.066±0.41 1.520±0.31 1.402±0.00 1.710±0.62 1.233±0.45 0.582±0.13 0.779±0.26 0.721±0.28 1.768±0.12 0.247±0.08 2.229±0.73 1.178±0.11 1.090±0.15
ENSMUST00000183586 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.654±0.00 N/A
ENSMUST00000183731 N/A 0.553±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000037771 ENSMUST00000045738 N/A N/A 0.003±0.00 25.871±2.56 0.038±0.03 N/A 0.013±0.00 N/A 0.029±0.01 0.008±0.00 N/A 0.018±0.00 0.056±0.03 0.039±0.02
ENSMUSG00000087563 ENSMUST00000138427 N/A N/A N/A 38.263±9.82 0.078±0.02 N/A N/A N/A 0.137±0.12 N/A N/A N/A N/A 0.052±0.00

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