C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: isocitrate dehydrogenase 3 (NAD+) gamma
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000217901 IDH3G-005 ENSG00000067829 9606 - X:153785766-153794523 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartKidneyLungMuscleOvaryPlacentaTestisENST00000217901
Transcript ID Adipose Brain Breast Colon Heart Kidney Lung Muscle Ovary Placenta Testis
ENST00000217901 29.550±0.00 14.769±6.39 21.251±0.00 22.526±0.00 30.552±0.00 40.583±0.00 37.488±0.00 32.616±26.83 32.722±11.11 29.537±14.12 23.704±17.25

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001UV CIL_0001UV_0001 CGP X:153776412-153794523
CIL_0001UU CIL_0001UU_0001 CGP X:153785766-153798505

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000287 IEA magnesium ion binding
GO:0004449 IEA:ISS isocitrate dehydrogenase (NAD+) activity
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005739 IDA:ISS mitochondrion
GO:0005759 TAS mitochondrial matrix
GO:0005975 NAS carbohydrate metabolic process
GO:0006099 IEA:TAS tricarboxylic acid cycle
GO:0006102 ISS isocitrate metabolic process
GO:0016616 IEA oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0044237 TAS cellular metabolic process
GO:0044281 TAS small molecule metabolic process
GO:0051287 IEA NAD binding
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000052761 Idh3g-001 protein_coding Mus_musculus 0 1410
ENSMUST00000140944 Idh3g-009 processed_transcript Mus_musculus 0 941
ENSMUST00000129070 Idh3g-008 retained_intron Mus_musculus 0 741
ENSMUST00000156299 Idh3g-002 retained_intron Mus_musculus 0 741
ENSMUST00000129367 Idh3g-004 retained_intron Mus_musculus 0 721
ENSMUST00000119710 4933405O20Rik-001 protein_coding Mus_musculus 0 497
ENSMUST00000148419 Idh3g-007 retained_intron Mus_musculus 0 470
ENSMUST00000145341 Idh3g-003 processed_transcript Mus_musculus 0 462
ENSMUST00000142707 Idh3g-005 retained_intron Mus_musculus 0 350

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