C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: farnesyl-diphosphate farnesyltransferase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000220584 FDFT1-001 ENSG00000079459 9606 + 8:11802611-11839309 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastHeartKidneyLiverLungOvaryPlacentaTestisENST00000220584
Transcript ID Adrenal Brain Breast Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000220584 7.413±0.00 12.805±1.17 5.182±2.98 3.353±2.25 18.631±0.00 8.054±6.16 9.836±4.52 19.433±6.42 14.386±3.67 14.996±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Y4 CIL_0008Y4_0001 VISTA 8:11271783-11873892
CIL_000919 CIL_000919_0001 VISTA 8:11446673-12047186
CIL_0007PQ CIL_0007PQ_0001 VISTA 8:11649159-12249913

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004310 TAS:IEA farnesyl-diphosphate farnesyltransferase activity
GO:0005783 IDA endoplasmic reticulum
GO:0005789 TAS endoplasmic reticulum membrane
GO:0006694 TAS steroid biosynthetic process
GO:0006695 TAS cholesterol biosynthetic process
GO:0008299 IEA isoprenoid biosynthetic process
GO:0008610 IEA lipid biosynthetic process
GO:0009058 IEA biosynthetic process
GO:0016021 IEA integral component of membrane
GO:0016491 IEA oxidoreductase activity
GO:0016740 IEA transferase activity
GO:0044255 TAS cellular lipid metabolic process
GO:0044281 TAS small molecule metabolic process
GO:0051996 IEA squalene synthase activity
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000054963 Fdft1-201 protein_coding Mus_musculus 0 1291
ENSMUST00000038304 Gm6781-201 processed_pseudogene Mus_musculus 0 985

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