C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: farnesyl diphosphate farnesyl transferase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000054963 Fdft1-201 ENSMUSG00000021273 10090 - 14:63145153-63177793 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLiverOvaryPlacentaTestisENSMUST00000054963
Transcript ID Brain Liver Ovary Placenta Testis
ENSMUST00000054963 25.342±10.15 46.852±9.34 30.861±1.37 41.833±16.71 100.306±19.46

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007PQ CIL_0007PQ_0002 VISTA 14:62762164-63363066
CIL_000919 CIL_000919_0002 VISTA 14:62906721-63507169
CIL_0008Y4 CIL_0008Y4_0002 VISTA 14:63067789-63669845
CIL_00051N CIL_00051N_0002 CGP 14:63122462-63177793

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004310 IEA farnesyl-diphosphate farnesyltransferase activity
GO:0005783 IEA endoplasmic reticulum
GO:0006695 IEA cholesterol biosynthetic process
GO:0008299 IEA isoprenoid biosynthetic process
GO:0016021 IEA integral component of membrane
GO:0016491 IEA oxidoreductase activity
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0045338 IEA farnesyl diphosphate metabolic process
GO:0051996 IEA squalene synthase activity
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000220584 FDFT1-001 protein_coding Homo_sapiens 0 1291
ENST00000443614 FDFT1-002 protein_coding Homo_sapiens 0 822
ENST00000446331 FDFT1-005 processed_transcript Homo_sapiens 0 747
ENST00000525283 FDFT1-013 nonsense_mediated_decay Homo_sapiens 0 760
ENST00000525607 FDFT1-003 nonsense_mediated_decay Homo_sapiens 0 1205
ENST00000525777 FDFT1-018 protein_coding Homo_sapiens 0 1090
ENST00000525900 FDFT1-006 protein_coding Homo_sapiens 0 1205
ENST00000525954 FDFT1-010 retained_intron Homo_sapiens 0 1206
ENST00000528643 FDFT1-011 protein_coding Homo_sapiens 0 1090
ENST00000528729 FDFT1-021 retained_intron Homo_sapiens 0 488
ENST00000528812 FDFT1-007 protein_coding Homo_sapiens 0 1205
ENST00000529464 FDFT1-004 nonsense_mediated_decay Homo_sapiens 0 734
ENST00000529521 FDFT1-022 retained_intron Homo_sapiens 0 333
ENST00000530337 FDFT1-012 protein_coding Homo_sapiens 0 431
ENST00000530664 FDFT1-009 protein_coding Homo_sapiens 0 1203
ENST00000531249 FDFT1-019 retained_intron Homo_sapiens 0 496
ENST00000531733 FDFT1-017 retained_intron Homo_sapiens 0 272
ENST00000532266 FDFT1-020 nonsense_mediated_decay Homo_sapiens 0 388
ENST00000538689 FDFT1-201 protein_coding Homo_sapiens 0 1205
ENST00000615631 FDFT1-202 protein_coding Homo_sapiens 0 1291
ENST00000618539 FDFT1-203 protein_coding Homo_sapiens 0 1291
ENST00000622850 FDFT1-204 protein_coding Homo_sapiens 0 1205
ENST00000623368 FDFT1-205 protein_coding Homo_sapiens 0 1205

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